Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00452 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCTGATGGCAGAGAGGAGGAGGAGGAGGAAGAGGAAGCAGCAGAAGAAATCATCACAAGAGAAGAAAGCAGCAGGTTGTTACACCAGCACCAGGAGGCAGCAGGTTCCAATTTCATCATCAACAATAATCATCATCATCATCAACATCACCACCACCACACAACAAAGCAGCTAGACTTCATGGACTTGTCACTTGGTAGCAGCAAGGATGAAGGGAATTTGCAAGGATCATCTTCTTCTGTCTATGctcatcatcatcatgcagcaagtgctagttcttctgccaatggtaacaacaacaacagcagcagcagcaacttgcagcaacagcagcagcagcctgctgagaaggagcacatgtttgataaagTAGTGACACCAAGTGATGTGGGGAAGCTGAACCGGTTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGTCTGTTGCTGAATTTTGAGGACAGGAATGGTAAGTTGTGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGTTGGAGCCGTTTTGTTAAGGAGAAGAAGCTTGATGCTGGTGACATGGTGTCCTTCCAGCGTGGTGTTGGGGAGTTGTATAGGCATAGGTTGTACATAGATTGGTGGAGAAGGCCTGATCATCATCACCATCACCATCATGGCCCTGACCATTCAACCACACTCTTCACACCTTTCTTAATTCCCAATCAGCCTCATCACTTAATGTCCATCAGATGGGGTGCCACTGGCAGATTGTACTCCCTCCCTTCCCCAACCCCACCACGCCACCATGAACACCTCAATTACAACAATAACGCCATGTATCATCCCTTTCATCACCATGGTGCTGGAAGTGGAATTAATGCTACTACTCATCACTACAACAACTATCATGAGATGAGTAGTACTACTACTTCAGGATCTGCAGGCTCAGTCTTTTACCACAGGTCAACACCCCCAATATCAATGCCATTGGCTGACCACCAAACCTTGAACACAAGGCAGCAGCAACAACAACAACAACAACAAGAGGGAGCTGGCAATGTTTCTCTTTCCCCTATGATCATTGATTCTGTTCCAGTTGCTCACCACCTCCATCATCAACAACACCATGGTGGCAAGAGTAGTGGTCCTAGTAGTACTAGTACTAGTCCTAGCACTGCAGGGAAAAGACTAAGGCTATTTGGGGTCAACATGGAATGTGCTTCTTCAACATCAGAAGACCCCAAATGCTTCAGCTTGTTGTCCTCATCTTCAATGGCTAATTCCAATTCACAACCACCACTTCAGCTTTTGAGGGAAGATACACTTTCGTCATCATCGGCAAGGTTTGGGGATCAGAGAGGAGTAGGGGAACCTTCAATGCTTTTTGATCTGGACCCTTCTTTGCAATACCGGCAGTGA 1476 0.4255 MELMQEVKGYSDGREEEEEEEEAAEEIITREESSRLLHQHQEAAGSNFIINNNHHHHQHHHHHTTKQLDFMDLSLGSSKDEGNLQGSSSSVYAHHHHAASASSSANGNNNNSSSSNLQQQQQQPAEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDMVSFQRGVGELYRHRLYIDWWRRPDHHHHHHHGPDHSTTLFTPFLIPNQPHHLMSIRWGATGRLYSLPSPTPPRHHEHLNYNNNAMYHPFHHHGAGSGINATTHHYNNYHEMSSTTTSGSAGSVFYHRSTPPISMPLADHQTLNTRQQQQQQQQQEGAGNVSLSPMIIDSVPVAHHLHHQQHHGGKSSGPSSTSTSPSTAGKRLRLFGVNMECASSTSEDPKCFSLLSSSSMANSNSQPPLQLLREDTLSSSSARFGDQRGVGEPSMLFDLDPSLQYRQ 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00452 491 Pfam B3 DNA binding domain 131 234 IPR003340 GO:0003677
Gma07g00452 491 MobiDBLite consensus disorder prediction 13 27 - -
Gma07g00452 491 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 67 448 - -
Gma07g00452 491 SUPERFAMILY DNA-binding pseudobarrel domain 127 219 IPR015300 -
Gma07g00452 491 MobiDBLite consensus disorder prediction 1 28 - -
Gma07g00452 491 CDD B3_DNA 129 218 IPR003340 GO:0003677
Gma07g00452 491 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 67 448 IPR044800 GO:0003700
Gma07g00452 491 ProSiteProfiles B3 DNA-binding domain profile. 131 231 IPR003340 GO:0003677
Gma07g00452 491 MobiDBLite consensus disorder prediction 396 412 - -
Gma07g00452 491 MobiDBLite consensus disorder prediction 442 491 - -
Gma07g00452 491 MobiDBLite consensus disorder prediction 79 125 - -
Gma07g00452 491 MobiDBLite consensus disorder prediction 442 469 - -
Gma07g00452 491 MobiDBLite consensus disorder prediction 322 339 - -
Gma07g00452 491 SMART B3_2 131 232 IPR003340 GO:0003677
Gma07g00452 491 Coils Coil 14 34 - -
Gma07g00452 491 MobiDBLite consensus disorder prediction 388 412 - -
Gma07g00452 491 MobiDBLite consensus disorder prediction 322 349 - -
Gma07g00452 491 MobiDBLite consensus disorder prediction 79 128 - -
Gma07g00452 491 Gene3D - 125 245 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00452 Gma-Chr7 4143331 4145604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00452 118 428 RAV Transcription Factor Family AT2G46870 45.833 2.05e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma07g00452 B3 1.1e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00452 - - gmx:100778733 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00452 07 4143331 4145604 Gma07g00452 07 4143331 4145604 ECH
Gma07g00452 07 4143331 4145604 Gma16g00149 16 1486700 1488919 GST