Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00423 ATGGCTTCTTTTGGAGCAAATACTGTAACAAAGCCAATCAAAAAGAGGAAAAGAACGATTGAGATCAAGAAAGTTGAGCAGATAAACAGGCGTTACGTGACCTTCTCTAAACGCAAATTAGGGTTATTCAATAAACTCACCGAGCTCTCAGTTCTGTGTCAAGTGGAAGCCGCTGTGATCATCACCTCCCAAAACGGGAAGCTCTATACGTGTGGCTACCCCGACGCCGATGCCGTCGTTCGCCGCTACCTCAGCGGAGGGCTATCCCGAGGGCTGGACAGTGAAAGCAAAAAGAGACAGCAAGATGCAATTGAAACCCTAAGGCCTGAATACGAGGCCACTCAGAACCACTTGAAAGAAGAGCAAAAGCGTTTGCAAGAAATCAAAGAGACGCGAAAGAGTAGTTTGTGCTTTCCCTCGTGGTGGAATCTCCCCACCGAGGGTATGGGTTTGGAGGATCTTGAACAGTTCAAGACTTCTTTGGAACGTTTGAAGTTTAACCTAGTTGGGGCGCTGCAAGAGAAGCAGATGAATTCGGTCCCATCAATGCCAAATGCTCTTATGGTTCCACCAATGCCATCTACTGTGCTTCCACCAGTGTCACATGCTGCTATGGTTCCACCAATGATGCCGCCACAGTTTCAAAACATGCCACTCTTGAGTGTTCAACGTTTAAGTGGAAATCAAGTTCAAGATGATTATTGGAGGAGTGCTGCTATAGCTAGTAATGGTTTTGGAAGCCTGAAAAGTTATGGATATGCTACTTAA 768 0.4609 MASFGANTVTKPIKKRKRTIEIKKVEQINRRYVTFSKRKLGLFNKLTELSVLCQVEAAVIITSQNGKLYTCGYPDADAVVRRYLSGGLSRGLDSESKKRQQDAIETLRPEYEATQNHLKEEQKRLQEIKETRKSSLCFPSWWNLPTEGMGLEDLEQFKTSLERLKFNLVGALQEKQMNSVPSMPNALMVPPMPSTVLPPVSHAAMVPPMMPPQFQNMPLLSVQRLSGNQVQDDYWRSAAIASNGFGSLKSYGYAT 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00423 255 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Gma07g00423 255 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Gma07g00423 255 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Gma07g00423 255 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Gma07g00423 255 PANTHER MADS BOX PROTEIN 11 186 - -
Gma07g00423 255 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 11 186 - -
Gma07g00423 255 Coils Coil 111 131 - -
Gma07g00423 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 70 IPR002100 GO:0003677|GO:0046983
Gma07g00423 255 Gene3D - 28 114 IPR036879 GO:0003677|GO:0046983
Gma07g00423 255 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Gma07g00423 255 SUPERFAMILY SRF-like 16 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00423 Gma-Chr7 3847148 3847915 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00423 15 169 Type I MADS-box Gene Family AT3G04100 35.583 3.00e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma07g00423 SRF-TF 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00423 - - gmx:100818284 467.618