Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00421 ATGGCTTCTTCTGGAGCAAATACTGCAACAAAGCCAATCAAAAAAAGGAAAAGAACGATTGAGATCAAGAAAGTTGAGCAGATAAACAGGCGTCACGTGACCTTCTCCAAACGCAAATTAGGGTTATTCAATAAACTCACAGAGCTCTCAATTCTGTGCCAAGTGGAAGCCGCTGTGATCATCACCTCCCAAAACGGGAAGCTCTATACGTGTGGCTACCCCGACGCCGATGCCGTCGTTCGCCGCTACCTCAACGGAGGGCTACCCCGGCGGCTGGACAGTGCATGCAAAAAGAGACAGCAAGATGCAATTGAAACCCTAAGGCTTGAATACGAGGCCACTCAGAACCACTTGAAAGAAGAGCAAAAGCGTTTGCAAGAAATCAAAGAGACGCGAAAGAGTAGTTTGCGCTTTCCCTCGTGGTGGAATCTCCCCACCGAGGGTATGGGTTTGGAGGATCTTGAACAGTTCAAGACTTCTTTGGAACGTTTGAAGTTTAACCTAGTTGGGGCGCTGCAAGAGAAGCAGATGAATTCGGTCCCATCAATGCCACATGCTGctatgcttccaccaatgtcatctactatggttccaccaatgccatctactgtggttccaccagtgccacatgctgctatggttccgccaatgtcatctactatggttccaccaatgccacatgctgctatggttccaccaatgATGCCGCCACAGTTTCAAAGCATGCCGCTCTTGAGTGCTCAACGTTTAAGTGGAAATCAAGTTCAAGATGATTATTGGAGGAGTGCTGCTATAGCTAGTACTAGTTCGACGTTTGCTTCAAATGGTTTTGGAAGTCTGAAAAGTTATGGGTATACTACTTAA 864 0.39 MASSGANTATKPIKKRKRTIEIKKVEQINRRHVTFSKRKLGLFNKLTELSILCQVEAAVIITSQNGKLYTCGYPDADAVVRRYLNGGLPRRLDSACKKRQQDAIETLRLEYEATQNHLKEEQKRLQEIKETRKSSLRFPSWWNLPTEGMGLEDLEQFKTSLERLKFNLVGALQEKQMNSVPSMPHAAMLPPMSSTMVPPMPSTVVPPVPHAAMVPPMSSTMVPPMPHAAMVPPMMPPQFQSMPLLSAQRLSGNQVQDDYWRSAAIASTSSTFASNGFGSLKSYGYTT 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00421 287 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 70 IPR002100 GO:0003677|GO:0046983
Gma07g00421 287 PANTHER MADS BOX PROTEIN 9 186 - -
Gma07g00421 287 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Gma07g00421 287 Gene3D - 28 111 IPR036879 GO:0003677|GO:0046983
Gma07g00421 287 SUPERFAMILY SRF-like 16 92 IPR036879 GO:0003677|GO:0046983
Gma07g00421 287 Coils Coil 97 131 - -
Gma07g00421 287 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Gma07g00421 287 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Gma07g00421 287 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Gma07g00421 287 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Gma07g00421 287 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 9 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00421 Gma-Chr7 3824218 3825081 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00421 15 165 Type I MADS-box Gene Family AT5G60440 32.903 4.66e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma07g00421 SRF-TF 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00421 - - gmx:100817750 479.944