Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00419 ATGGATTCTTCATCTAGAGCAAAGACTGTCAATGCAGCAACAATGCAAAACAAAAAGAGGGGAAAGATTGAGATCAAAGAAGTTGAGCAGAGAAACCGGCGTTACGTGACTTTCTCCAAACGCAAACTAGGGTTATTCAACAAACTCACCGAGCTCTCTGTTCTCTGCCAAGTAGAGACCGCTGTGATCATCACCTCCCAAAACGGGAAGCTCTATTCCTGCGGCTACCCCGACCCCGACGCCGTCGTTCGGCGCTACCTCACCGGAGGGCCTCCGCTGCGGCGCAACCGTGCAATCAAGAGGGAGCAGCAAGAGTTCGTTGAGCAGCAAAGGCTGGAATACGAGGCTGTTCAGAATCAGTTGAAAGAAGAGAAAAAGCGTCTGCAAGAAATCAAAGGGACGCAAAATAATAATGGTTTCTGCTTTGCGGCCCCTTGGTGGAATCTCCCCACCGAGGGTATGGGTTTGGAGGATCTTGAACAGTTCAAGACTTCTTTGGAACGTTTGAAGTTTAACCTAGTTGGGGCGCTGCAAGAGAAGCAGATGAATTCGGTCCCATcaatgccacatgctgctatgcttccaccaatgccatctactgtggttccaccagtgccacatgctgctatggttccaccaatgtcatctactatggttccaccagtgccacatgctgctatggttccaccaatgATGCCACCACAGTTTCAAAACATGTCGCTCTTGAGGGCTCAACGTTTAAGTGGAAATCAAGTTCAAGATGATTATTGGAGGAGTGCTGCTATAGCTAGTACTGCTTCGACGTTTGCTTCAAATGTTTTTGGAAGCCTGAAAAATTATGGGTATACTACTTAA 855 0.4 MDSSSRAKTVNAATMQNKKRGKIEIKEVEQRNRRYVTFSKRKLGLFNKLTELSVLCQVETAVIITSQNGKLYSCGYPDPDAVVRRYLTGGPPLRRNRAIKREQQEFVEQQRLEYEAVQNQLKEEKKRLQEIKGTQNNNGFCFAAPWWNLPTEGMGLEDLEQFKTSLERLKFNLVGALQEKQMNSVPSMPHAAMLPPMPSTVVPPVPHAAMVPPMSSTMVPPVPHAAMVPPMMPPQFQNMSLLRAQRLSGNQVQDDYWRSAAIASTASTFASNVFGSLKNYGYTT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00419 284 Coils Coil 104 138 - -
Gma07g00419 284 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 73 IPR002100 GO:0003677|GO:0046983
Gma07g00419 284 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Gma07g00419 284 PANTHER MADS BOX PROTEIN 12 191 - -
Gma07g00419 284 SUPERFAMILY SRF-like 20 102 IPR036879 GO:0003677|GO:0046983
Gma07g00419 284 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 12 191 - -
Gma07g00419 284 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Gma07g00419 284 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Gma07g00419 284 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Gma07g00419 284 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Gma07g00419 284 Gene3D - 30 114 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00419 Gma-Chr7 3812423 3813377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00419 16 170 Type I MADS-box Gene Family AT5G60440 35.220 2.43e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma07g00419 SRF-TF 6.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00419 - - gmx:121175156 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00419 07 3812423 3813377 Gma16g00114 16 1136751 1137515 GST