Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00417 ATGTGTGGTGGTGCGATTATCTCCGACTTCATTCCAGCGGGTCCCGCCGGCGGGGCGCAGCGCGTGACCGCCGACATCCTGTGGCCGAATTTGAGGAAGCGGTTCTCGAAGTCGCTGCTGGACGATGATTTCGAGGCAGGGTTCAGAGAATTCGAGGATGACTCGGAAATCGAGGATGTCGATGATGAGGACGATGAAGAGGAGGAGGAGTTGAAGAAGAAGAAGCCCTTTGGGTTCTCTCGCTCCAACAACAAGGCTGCTTCTAAGCCTCTCTCTCGTGGAGCAACAACTGTGAAATCTGTGGAATCAAAGGGGCAAGCTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAGTATCGCGGAATCCGCCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATTCGCGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTACGATGCTGAAGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGGCGCTGCTTCCTCAAAACGTCTCAAGGCGAATCCAGAGGCTCAGCCAATGAAGAAAAATCTGAACTCTGTGAAGCCGAAAATAAACCAGATGTTCAATTTTGGTGACAATCTTGAGGGCTACTACAGCCCTATAGATCAGGTGGAACAGAAACCACTGGTTAACCAGTATGTTAACCGTGCCCCGTTTGCTGGAAATGGAGTTCAAGTCTCACCTGTTACTCCATCTGCTGATGTTACTGCTTACTTCAGCTCTGAGCATTCGAGCAGCTCGTTTGATTATTCTGACCTCGGATGGGGTGAACAAGTCCCCAAGACACCCGAGATCTCATCCATGCTTTCTGCTGCTCCTTTGGACGGTGAATCTCAGTTTGTGCAGGGTGCTGCTGATCAGAATCAGAAGAAGAACAACCTGCTGGATATGGCATCTGTGCAAGATGATTCTGCAAAAACTCTTTCTGAGGAGCTTGCAGACATTGAATCCCAGCTGAAGTTCTTTGAGACCCCTTCTTTTCTTGATGAAGCCTGGGCTGATGCTGCATTGGCGTCTTTGCTCAGTGAAGATGCATCTCAGGATGCTGCTGGAAACCCTATGAACCTTTGGAGCTTCGACGACCTGCCTTCCATGGCAGGAGTCTTCTGA 1179 0.5072 MCGGAIISDFIPAGPAGGAQRVTADILWPNLRKRFSKSLLDDDFEAGFREFEDDSEIEDVDDEDDEEEEELKKKKPFGFSRSNNKAASKPLSRGATTVKSVESKGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSGAASSKRLKANPEAQPMKKNLNSVKPKINQMFNFGDNLEGYYSPIDQVEQKPLVNQYVNRAPFAGNGVQVSPVTPSADVTAYFSSEHSSSSFDYSDLGWGEQVPKTPEISSMLSAAPLDGESQFVQGAADQNQKKNNLLDMASVQDDSAKTLSEELADIESQLKFFETPSFLDEAWADAALASLLSEDASQDAAGNPMNLWSFDDLPSMAGVF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00417 392 CDD AP2 118 176 IPR001471 GO:0003700|GO:0006355
Gma07g00417 392 MobiDBLite consensus disorder prediction 51 122 - -
Gma07g00417 392 PANTHER DNA-BINDING DOMAIN 1 387 IPR044808 GO:0003700|GO:0009873
Gma07g00417 392 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Gma07g00417 392 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Gma07g00417 392 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Gma07g00417 392 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Gma07g00417 392 MobiDBLite consensus disorder prediction 51 68 - -
Gma07g00417 392 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Gma07g00417 392 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Gma07g00417 392 MobiDBLite consensus disorder prediction 81 103 - -
Gma07g00417 392 PANTHER EREBP TRANSCRIPTION FACTOR 1 387 - -
Gma07g00417 392 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00417 Gma-Chr7 3760085 3763645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00417 1 392 AP2-EREBP Transcription Factor Family AT1G53910 42.092 1.32e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma07g00417 AP2 4.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00417 K09286 - gmx:100818646 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00417 07 3760085 3763645 Gma07g00417 07 3760085 3763645 ECH
Gma07g00417 07 3760085 3763645 Gma16g00112 16 1097208 1101430 GST