Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00412 ATGGCCACTGCTACGAATGCCGCCGCCGCCCCACCACGCCAGCTCTCCCAGAAGGAAGCTGACATCCAGATGATGTTGGCCGCCGACGTCCACCTCGGCACCAAGAACTGCGACTTCCAAATGGAACGTTACATCTTCAAGCGCCGCAACGACGGGATTTACATTATTAACCTTGGGAAGACGTGGGAGAAGCTTCAGCTAGCAGCTAGGGTTATAGTTGCAATTGAGAACCCCCAGGATATCATTGTTCAATCTGCAAGGCCTTATGGGCAAAGAGCGGTTCTGAAGTTTGCTCAGTACACTGGTGCTCATGCTATTGCTGGAAGGCACACTCCTGGTACCTTCACCAATCAGCTTCAAACTTCCTTCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGACACCGATTCACCTATGAGGTACGTGGACATTGGAATTCCTGCCAACAACAAGGGCAAACACAGCATTGGTTGTCTCTTCTGGCTCCTTGCAAGGATGGTGTTGCAGATGAGGGGTACCATTCGGCCTGGCCTCAAATGGGATGTCATGGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAGGAGGAAGCTCCGGCGGTTGATTATGCCATCACGGATTTCAATGCAGGTGCTATTGCTGCTGATGGCCAGTGGCCTGGTACAATTGATCAATCATGGAGTGATGCAGTTCCTCAACCTATTCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGCAGGAGGAGATTGGGGGGAAGCTGTTCCACCACCACAACAAATCCCTGTACCTCCCTCTGGAATTGATACTGTCCAACCATCTGGCTGGGATTAA 933 0.5123 MATATNAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAVDYAITDFNAGAIAADGQWPGTIDQSWSDAVPQPIPAVPGVNWGAPAEAPAAAGGDWGEAVPPPQQIPVPPSGIDTVQPSGWD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00412 310 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma07g00412 310 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma07g00412 310 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma07g00412 310 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma07g00412 310 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma07g00412 310 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma07g00412 310 PANTHER 40S RIBOSOMAL PROTEIN SA 13 295 - -
Gma07g00412 310 MobiDBLite consensus disorder prediction 264 310 - -
Gma07g00412 310 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Gma07g00412 310 PANTHER 40S RIBOSOMAL PROTEIN SA 13 295 IPR005707 GO:0003735|GO:0006412|GO:0015935
Gma07g00412 310 Gene3D - 21 227 - -
Gma07g00412 310 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma07g00412 310 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Gma07g00412 310 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Gma07g00412 310 Pfam Ribosomal protein S2 124 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma07g00412 310 Pfam Ribosomal protein S2 25 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma07g00412 310 Hamap 40S ribosomal protein SA [rps-0]. 9 257 IPR027498 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00412 Gma-Chr7 3694121 3696009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00412 4 284 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.825 2.73e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00412 K02998 - gmx:548014 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00412 07 3694121 3696009 Gma07g00412 07 3694121 3696009 ECH
Gma07g00412 07 3694121 3696009 Gma16g00108 16 1048294 1050358 GST