Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00399 ATGATACAGAAAAGAGAGATGGCCCACTTCATTCATCATATATTTACATTCATATGTGGCTACGCAGTTGGGTTTAAAAGATCATGGAAAGTCTCTCTGGTGGTATTCTCAGTCACTCCATTGACTATGTTCTGTGGAATGGCTTACAAAGCACTTTATGGTGGCCTAACAGCAAAAGAGGAAGCTTCTTATACGAAAGCTGGTAGCATTGCGGAACAGGGCATCGGTTCAATTAGGACAGTGTTTTCATTTGTTGCAGAAAGGCAATTGACTGGAAAATATGCTGAGCTACTGCAAAAATCAGCTCCAATAGGGGACAGAGTTGGTTTTGCTAAAGGTATTGGCATGGGTGTGATCTACTTAATAATGTATTCAACATGGGCATTGGCTTTCTGGTATGGCTCTATATTAATTGCCAGCAATGAACTTGATGGAGGTTCTGCTATTGCTTGTTTCTTTGGTGTCAATGTAGGGGGAAGAGGGTTGGCACTGACACTTTCATATTTTGCACAATTTGCTCAAGGGACTGTTGCAGCTAGCCGTGTATTCTATATCATAGAGAGAATCCCTGAGATTGATTCCTATAGCCCTGAGGGAAGGAAGCTTTCTGGTGTTCGTGGAAGGATTGAGTTAAAAAGTGTTAGTTTTGCATACCCATCTCGTCCTGATTCTCTTATATTTGATTCCCTTAACTTGGTATTACCATCTTCAAAAACTTTGGCAGTGGTTGGTGCCAGTGGTGGGGGAAAGTCCACTATCTTTGCTCTCATAGAGAGGCTTTATGACCCTATTGAAGGGATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAGTGGCTAAGTGCTCTTTGCCACATCTATTCTGGACTGCGAGTGGACAACTACTCTTATGCCAAAGCTAGTAACATGCTTCTGGCCAGAAGTGACTGTGTTGAGGATTTCTGTTTAAAGGTCAAAGGTGGAAGCACAGTGGCCTTGGTGGGACCAAGTGGATCAGGGAAGTCAACAGTCATATGGTTGACCCAGAGGTTCTATGATCCTGATCATGGAAAGGTGATGATGAGTGGTATAGATTTGAGGGAGATTGATGTGAAGTGGTTGAGGAGGCAAATAGCTTTGGTGGGTCAAGAACCTGCATTGTTTGCTGGGAGCATAAGGGAAAATATAGCATTTGGGGACCCAAATGCTTCATGGACTGAAATTGAAGAGGCTGCAAAGGAGGCTTACATCCACAAGTTCATCAGTGGCCTTCCTCAAGGATATGAAACTCAGGTTGGTGAAAGCGGGGTCCAGTTATCAGGTGGCCAGAAACAAAGAATTGCTATAGCCAGGGCCATATTGAAGAAATCAAGGGTGCTTTTGCTTGATGAAGCAAGCAGTGCCTTGGACTTAGAATCAGAAGAAGCTGATAAGATCGCAGTTATGAGAGATGGGGAAGTGGTGGAGTATGGGAGCCATGACAAGCTCATGGCTTCAGGTCAAAATGGCTTAATTTCTTACAACCCTGTATCAAACAAGGCATCTTTGATTCTTCTCTCTCACACTTCTTTTGGCACTTCATGCTTCAACTCTGACTTAGCTCCTTGCCTTCAATATACCAGACATGCAATTTTATTGAGCCCTGAATAA 1638 0.431 MIQKREMAHFIHHIFTFICGYAVGFKRSWKVSLVVFSVTPLTMFCGMAYKALYGGLTAKEEASYTKAGSIAEQGIGSIRTVFSFVAERQLTGKYAELLQKSAPIGDRVGFAKGIGMGVIYLIMYSTWALAFWYGSILIASNELDGGSAIACFFGVNVGGRGLALTLSYFAQFAQGTVAASRVFYIIERIPEIDSYSPEGRKLSGVRGRIELKSVSFAYPSRPDSLIFDSLNLVLPSSKTLAVVGASGGGKSTIFALIERLYDPIEGIITLDGHDLRTLQVKWLSALCHIYSGLRVDNYSYAKASNMLLARSDCVEDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDHGKVMMSGIDLREIDVKWLRRQIALVGQEPALFAGSIRENIAFGDPNASWTEIEEAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEEADKIAVMRDGEVVEYGSHDKLMASGQNGLISYNPVSNKASLILLSHTSFGTSCFNSDLAPCLQYTRHAILLSPE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00399 545 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 293 505 IPR003439 GO:0005524
Gma07g00399 545 PANTHER - 6 284 - -
Gma07g00399 545 Pfam ABC transporter transmembrane region 7 156 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma07g00399 545 Gene3D ABC transporter type 1, transmembrane domain 7 198 IPR036640 GO:0005524|GO:0016021
Gma07g00399 545 SUPERFAMILY ABC transporter transmembrane region 9 193 IPR036640 GO:0005524|GO:0016021
Gma07g00399 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 287 IPR027417 -
Gma07g00399 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 496 IPR027417 -
Gma07g00399 545 PANTHER - 314 501 - -
Gma07g00399 545 ProSitePatterns ABC transporters family signature. 435 449 IPR017871 GO:0005524
Gma07g00399 545 Pfam ABC transporter 228 283 IPR003439 GO:0005524
Gma07g00399 545 CDD ABC_6TM_Pgp_ABCB1_D1_like 7 182 - -
Gma07g00399 545 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 7 174 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma07g00399 545 PANTHER ABC TRANSPORTER B FAMILY 314 501 - -
Gma07g00399 545 PANTHER ABC TRANSPORTER B FAMILY 6 284 - -
Gma07g00399 545 Pfam ABC transporter 316 462 IPR003439 GO:0005524
Gma07g00399 545 Gene3D - 199 283 IPR027417 -
Gma07g00399 545 Gene3D - 315 471 IPR027417 -
Gma07g00399 545 SMART AAA_5 323 541 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00399 Gma-Chr7 3608656 3615196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00399 6 500 Calmodulin-binding Proteins AT2G36910 31.928 1.57e-66 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00399 K05658 - gmx:100816700 516.924