Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00390 ATGCAGAATCACAGGCTGAAGCAGCAGCAGCAGCAGCAACAACAAGCTCTTATGCAGCAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCATATCCAAGTGGAAATTTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAACATCCATACACAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTCTCGGGTACTGGCCCAGTTGAAGGTTGTAAGCTTATCAGAAAGGATAAGTCATCCTATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCTAGTGGTCAGAGAGAGGATACGTCAGGTCACTACAATATATTTGTTGGCGATCTAAGTCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAGGATGCACAAAGCTCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAGATACGTTGTAACTGGGCAACAAAAGGTGCTGGTGGTAATGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAACTTACAAATGGCTCATCTGAAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTCCAGAGGTAACTCAACTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCTGGAGTGATGGAGGAGGTTCGGGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAACGCCCAGTCTCTTCTATGTGGAAAACCAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTGCCTGGCCTGTCTGCAACTGATCTTTTGGCGTATGAGCGACAGCTAGCAATTAGCAAGATGGGTGGCGTCCACGCCTTGATGCATCCTCAAGGACAACATCATCTTAAACAAGCAGCAGCTATTGGAGCCAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1269 0.4673 MQNHRLKQQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPYPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSGTGPVEGCKLIRKDKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSSINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDAKSVVELTNGSSEDGKETSNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVMEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKPIKCSWGSKPTPPGTASNPLPPPAAASLPGLSATDLLAYERQLAISKMGGVHALMHPQGQHHLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00390 422 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 8 420 - -
Gma07g00390 422 CDD RRM3_TIA1_like 263 338 - -
Gma07g00390 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 338 IPR000504 GO:0003723
Gma07g00390 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 214 IPR000504 GO:0003723
Gma07g00390 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 125 IPR000504 GO:0003723
Gma07g00390 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 322 IPR000504 GO:0003723
Gma07g00390 422 MobiDBLite consensus disorder prediction 220 262 - -
Gma07g00390 422 MobiDBLite consensus disorder prediction 223 262 - -
Gma07g00390 422 Gene3D - 140 242 IPR012677 -
Gma07g00390 422 SUPERFAMILY RNA-binding domain, RBD 55 221 IPR035979 GO:0003676
Gma07g00390 422 Gene3D - 243 342 IPR012677 -
Gma07g00390 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Gma07g00390 422 CDD RRM1_TIA1_like 59 129 - -
Gma07g00390 422 Gene3D - 1 139 IPR012677 -
Gma07g00390 422 SUPERFAMILY RNA-binding domain, RBD 253 345 IPR035979 GO:0003676
Gma07g00390 422 CDD RRM2_PUB1 143 217 - -
Gma07g00390 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 131 IPR000504 GO:0003723
Gma07g00390 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 420 - -
Gma07g00390 422 Coils Coil 6 26 - -
Gma07g00390 422 SMART rrm1_1 143 216 IPR000504 GO:0003723
Gma07g00390 422 SMART rrm1_1 264 334 IPR000504 GO:0003723
Gma07g00390 422 SMART rrm1_1 58 127 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00390 Gma-Chr7 3537179 3544092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00390 58 332 Eukaryotic Initiation Factors Gene Family AT3G16380 27.397 5.85e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00390 K13201 - gmx:100781227 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00390 07 3537179 3544092 Gma07g00390 07 3537179 3544092 ECH
Gma07g00390 07 3537179 3544092 Gma16g00088 16 912704 918854 GST