Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00337 ATGAAGAACTTATGTGAGAATGGCTCTGGTCCTACCCATTTAACATCTTATGCTCTTGGATGCTCATCATGGGGGACTTCCTCTGAATCTGATGTGCAACAATCATCCATGTCCAAAAGTTTGAGCTTGAAAATGAGTGTTCTGCCGCAACAATGCCATAAGACCAAACCATTGAGTTTTCAATATCAAGATCGAGATTCATCTTCAACTCAATCAACCGGTCAGTCTTATCCAGAAGTTGGTTCAGCACAATCAGGTCAAATTTCAGTGCAGTGTAGCAATTCTTCTGCTAGTTCAACACACAACACAACTGGGGGAAAGAGTGTGGAAGGTGTCATCGGGTCAACTGTGGGGATTCAGGATTGTACCTTCCCTCCTTCACAACTGTGTTACAACCAATCACTTGCTCATACTGCATTCCACTTTGCTGAGCCGTGCTTTAGTGGCCTACTAGCTGCTCCATTTGTGCCACAATCTAATATTCATCATGCTCAGCTACTAGGAATGACTCCTGCTCGAATTCCTCTGCCACTTGATCTTAGTGAGGAGCCCATGTATGTGAACGCAAAGCAGTACCATGCTATTCTGAGACGCAGGCAGTATCGTGCAAAACTGGAAGCACAGAACAAACTCATCAAAGAACGGAAACCATATCTTCATGAGTCCCGCCATCTACATGCACTGAAGAGAGCTAGAGGTTCCGGTGGACGCTTTTTGAATGCCAAAAAGCTCCAAGAGTTGAAACTCACTTCAGCAAACCGTGGCCTAGATGTTTCTGGCTGTACTCAATTGAATCTGAGTGGAAATATGTCAGAATCAAAGGTTCAAGCAGTAGAAAACTTGAACTACAGAAATGGTGCTTCTACAACCACGTGTTCTGATGTCATTAGTACATCTAATAGTGATGATGTCTTCCAGCAACATGAGTCAGACTTTAGGTTATGTGGTTACCCTTCTCATATTGGAAGGAACATGCAGGGTTATTCCGCAGACATTGGTGGTGGTGGTGGTGGTGGAAATCAACACCGTCTATCAGTCCTTATGTGA 1047 0.4403 MKNLCENGSGPTHLTSYALGCSSWGTSSESDVQQSSMSKSLSLKMSVLPQQCHKTKPLSFQYQDRDSSSTQSTGQSYPEVGSAQSGQISVQCSNSSASSTHNTTGGKSVEGVIGSTVGIQDCTFPPSQLCYNQSLAHTAFHFAEPCFSGLLAAPFVPQSNIHHAQLLGMTPARIPLPLDLSEEPMYVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHALKRARGSGGRFLNAKKLQELKLTSANRGLDVSGCTQLNLSGNMSESKVQAVENLNYRNGASTTTCSDVISTSNSDDVFQQHESDFRLCGYPSHIGRNMQGYSADIGGGGGGGNQHRLSVLM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00337 348 ProSiteProfiles NF-YA/HAP2 family profile. 181 241 IPR001289 GO:0003700|GO:0006355
Gma07g00337 348 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 18 313 - -
Gma07g00337 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 183 238 IPR001289 GO:0003700|GO:0006355
Gma07g00337 348 PRINTS CCAAT-binding transcription factor subunit B signature 184 206 IPR001289 GO:0003700|GO:0006355
Gma07g00337 348 PRINTS CCAAT-binding transcription factor subunit B signature 215 238 IPR001289 GO:0003700|GO:0006355
Gma07g00337 348 SMART cbf3 180 241 IPR001289 GO:0003700|GO:0006355
Gma07g00337 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 18 313 IPR001289 GO:0003700|GO:0006355
Gma07g00337 348 Gene3D - 181 242 - -
Gma07g00337 348 MobiDBLite consensus disorder prediction 59 81 - -
Gma07g00337 348 ProSitePatterns NF-YA/HAP2 subunit signature. 186 206 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00337 Gma-Chr7 2985646 2990206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00337 23 346 CCAAT-HAP2 Transcription Factor Family AT1G17590 41.667 2.93e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma07g00337 CBFB_NFYA 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00337 K08064 - gmx:100500765 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00337 07 2985646 2990206 Gma07g00337 07 2985646 2990206 ECH
Gma07g00337 07 2985646 2990206 Gma16g00042 16 380315 382920 GST
Gma15g00261 15 2256202 2259590 Gma07g00337 07 2985646 2990206 PCT
Gma07g00337 07 2985646 2990206 Gma15g00261 15 2256202 2259590 PCT