LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma07g00319	ATGGTTGGAGGTTCATTAGCAGGGTTGCAAGAGCATCTCAAGTTAGCCCGAGACTACGCTCTCGAAGGCCTCTACGACACCTCCATCATCTTCTTCGACGGCGCCCTCGCCCAGATCAACAAGCACCTAAGCACTGTCCAAGACCCTTTAATCCGCGCGAAATGGATGAACGTAAAGAAATCACTTTCGGAGGAAACAGAAGTGGTAAAGCAGCTAGATGCAGAGAGAAGGGCTTTCAAAGACAACCCCATTGGCAGACGCCCTGCTTCGCCTCCCATTTCGGTGAAGTCATCATCGTCTTTCGTTTTTCAGCCGTTGGATGAGTACCCCACTTCATCCAGCGGTTCTGGTCCCGTTGATGATCCTGATGTGTGGCGGCCGCCCAGCAGGGACACCACCAGCCGGAGACCGGCGCGGCCCGGTCAAGTGGGTGCTCGGAAATCGGCCCAAGACGGGGCTTGGGCGCGTGGCGCTACAACCAGAAGTGGTGCCGCTGGGCGTGGTGCTAAGGCCGGTGCTACCGGTAGGGTTAACTCCGGGACTCGAGCTTCGACTACCGGAAAGAAGGGTGGCGCTGCTTCTGGAAAGGCTAGCAAGACGGATGCCGCTGCTGCAGCTAATGGCGATGCTGAAGATGGTAAGTCAAAGAAGCCTCAATATGAAGGTCCTGATCCAGAATTGGCTGCAATGCTTGAAAGGGACGTGTTAGAAACCTCTCCTGGAGTTAGATGGGATGATGTTGCAGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTCGTTCTTCCTTTGTGGATGCCTGAATATTTCCAGGGAATCAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTATCTTCTGCTACTTTAGCTTCTAAATGGCGTGGGGAGAGTGAGCGCATGGTGAGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTCATTGATGAAATTGATTCTCTATGCAATTCTAGGGGGGCTTCTGGTGAGCATGAATCGTCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCCACAAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCAGCTACTAACTTCCCTTGGGATATTGATGAGGCACTAAGGAGAAGGCTGGAAAAGCGTATATATATCCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATCAATTTGAAGACTGTTGAGGCAAGTTGTGCTGTGGCACCTGATGTCAATATAGACGAAGTGGCTCGCCGGACAGAGGGATATAGTGGAGATGATTTGACAAATGTCTGTCGCGATGCTTCCTTGAATGGTATGAGGCGCAAGATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCCAAGGATGAGATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGGAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTACCGAGTTTGGATCAGCATAA	1602	0.4938	MVGGSLAGLQEHLKLARDYALEGLYDTSIIFFDGALAQINKHLSTVQDPLIRAKWMNVKKSLSEETEVVKQLDAERRAFKDNPIGRRPASPPISVKSSSSFVFQPLDEYPTSSSGSGPVDDPDVWRPPSRDTTSRRPARPGQVGARKSAQDGAWARGATTRSGAAGRGAKAGATGRVNSGTRASTTGKKGGAASGKASKTDAAAAANGDAEDGKSKKPQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEASCAVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALGKVQRSVSQADIERHEKWFTEFGSA	533

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma07g00319	533	Pfam	AAA+ lid domain	444	485	IPR041569	-
	Gma07g00319	533	MobiDBLite	consensus disorder prediction	106	224	-	-
	Gma07g00319	533	MobiDBLite	consensus disorder prediction	210	224	-	-
	Gma07g00319	533	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	232	519	IPR027417	-
	Gma07g00319	533	ProSitePatterns	AAA-protein family signature.	390	409	IPR003960	GO:0005524\|GO:0016887
	Gma07g00319	533	Gene3D	-	239	524	IPR027417	-
	Gma07g00319	533	Gene3D	-	4	80	-	-
	Gma07g00319	533	CDD	AAA	275	418	-	-
	Gma07g00319	533	Pfam	ATPase family associated with various cellular activities (AAA)	281	418	IPR003959	GO:0005524\|GO:0016887
	Gma07g00319	533	PANTHER	AAA DOMAIN-CONTAINING	4	533	-	-
	Gma07g00319	533	SMART	AAA_5	277	420	IPR003593	-
	Gma07g00319	533	MobiDBLite	consensus disorder prediction	79	98	-	-
	Gma07g00319	533	PANTHER	KATANIN P60 ATPASE-CONTAINING SUBUNIT A1	4	533	-	-
	Gma07g00319	533	Coils	Coil	62	82	-	-
	Gma07g00319	533	Pfam	Vps4 C terminal oligomerisation domain	486	531	IPR015415	-
	Gma07g00319	533	Hamap	Meiotic spindle formation protein mei-1 [mei-1].	7	533	IPR028596	GO:0008017\|GO:0008568\|GO:0051013
	Gma07g00319	533	Gene3D	-	419	509	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma07g00319	Gma-Chr7	2708291	2712312	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma07g00319	233	525	Calmodulin-binding Proteins	AT3G56690	39.735	7.30e-49	179

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma07g00319	K07767		-	gmx:100787634	932.554

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma07g00319	07	2708291	2712312	Gma07g00319	07	2708291	2712312	ECH
	Gma07g00319	07	2708291	2712312	Gma08g01905	08	17155805	17159947	GST
	Gma13g03234	13	46411832	46413681	Gma07g00319	07	2708291	2712312	PCT
	Gma15g00121	15	991961	995309	Gma07g00319	07	2708291	2712312	PCT
	Gma07g00319	07	2708291	2712312	Gma13g03234	13	46411832	46413681	PCT
	Gma07g00319	07	2708291	2712312	Gma15g00121	15	991961	995309	PCT