Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00312 ATGGCTGCGTTCGCTAAACCCTCCCATTCCCAACTTCGTGCCCAAAGGGATCATCCTCTTCTTCCTTCTACTTCAACTTCAACTTCCAGCAACTTCAAGCTCAAAACATTCACTTTCTCCCACAACTTGCACACACTTCACCCCCCTTTTAGAAAAGCTAAACATATTTGTGTCTCGAATTCTGCCACTACCACCACCTCCCTCAGCAGCAACCACAACCCAAACTCTCATATTTACCAACTGTGCCTTCTTGGGAACTTGGACCGTGCCATGAGCTACTTAGACTCCATGCACGAGCTTCGAATTCCCGTTGAAGATGATGCTTACGTTGCCTTGATACGGCTGTGTGAGTGGAAGAGGGCAAGGAAAGAAGGATCTCGTGTTTACTCCTATGTTTCCATTTCCATGTCCCATTTGAGTCTTCAACTGGGGAATGCCCTTTTGAGCATGTTTGTGAGGTTTGGGAACTTGGTGGATGCTTGGTATGTTTTTGGGAGAATGGAGAAGAGGAATTTGTTCTCTTGGAATGTTTTGGTTGGTGGGTATGCTAAAGCTGGCCTCTTTGATGAGGCTTTGGACCTCTATCATAGAATGTTGTGGGTTGGTGTGAAACCTGATGTTTACACTTTCCcttgcgttttgaggacttgtggtggcatgcctaacttggtgaggggtagagagatccatgttcatgtcataaggttggtgttcgacaaaatgcctaatagagataggatttcgtggaatgccatgatttctgggtattttgaaaacggggtgtgtttGGAGGGACTGAGATTGTTTGGCATGATGATCAAATATCCGGTTGATCCAGATTTGATGACCATGACCAGTGTGATTACTGCATGTGAACTTCTGGGTGATGATAGATTGGGGAGGCAGATTCATGGTTATGTTCTGAGAACGGAGTTCGGGAGAGACCCTTCAATTCATAATTCGTTAATTCCAATGTACTCATCTGTTGGACTTATTGAGGAAGCTGAAACAGTTTTCTCTCGAACAGAATGTAGAGATGTGGTATCGTGGACTGCGATGATATCAGGTTATGAGAACTGTTTGATGCCTCAGAAAGCTCTTGAGACATATAAAATGATGGAAGCAGAAGGTATCATGCCAGATGAAATCACCATAGCCATAGTACTCTCTGCTTGTTCTTGCTTATGCAATTTAGACATGGGGATGAACCTTCATGAGGTAGCCAAGCAGAAAGGGCTCGTCTCTTATTCGATAGTTGCAAACTCACTCATTGACATGTATGCCAAGTGTAAATGCATTGACAAGGCCTTAGAGATTTTCCATTCTACTCTTGAGAAGAATATTGTATCTTGGACATCTATAATCCTTGGTCTTCGCATCAACAACCGGTGTTTTGAAGCTTTATTTTTCTTCAGGGAGATGATTCGTAGACTGAAGCCAAACTCTGTTACTTtaGTTATCTTCAGATGCCCTTTGTTCCTTCAGTTCCTTGTGCATAGGTGTTCTATTaagGTTCCAGCGGCGCCAATAGTGTTTTTGTTTGGCTTAGTGTTGTGTTTTATTCGTGACACTTCAATTTTTGGAGATCTTAGGTTTGGGCCTTCGAGGAGGATTTCTTTGGTTAAGATTAAGTGGGAGGATTGGATGATTGGATTTGTCAGCGCTGCAATTCCGCAAATTCCGTTATTGCGGTTTGTAAGCTGTTCGGAGGTAGGAGTGGTGCTTCGGTGGTGTTCCTCGGGATTGCAAAGTTGGTTTTTGCTTTGGTGTTTGGGAAACTCTCTTGGGAGAATTTTGGGTCAGTTTCCAATTGAGATTCTTGGGGTGCTTTTGTTGTTTGCTGGGATTGAGTTGGCTATGGCTGCCAAGGATATGCTTGTTTGTGAGGCTGTTTCTCTCACTGGATCAAGTGGTGCTTTAGGCTTCTTTGTTGGCATTGTGCTTggggtgatgccagTCTTCCATCTTACGTTAAAGTCCATTGTTGCTTCTTCTTCTGTCTTCCAACTTCCATTTCTCTCACTTGAAAATCCCGCAATCTCGCTTCAAACACCAGTCACAGCAAACAGTGATACTTTGATCCGTGTCAGATTCAGTCGTGGATGTAATGAAGCTCATTTTTTCATTGAATCTCGACAAGAAAACCATTTGGGTCTCTTAGTTTACTGGATTTCTAAAGAAAAGTGA 2187 0.3969 MAAFAKPSHSQLRAQRDHPLLPSTSTSTSSNFKLKTFTFSHNLHTLHPPFRKAKHICVSNSATTTTSLSSNHNPNSHIYQLCLLGNLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDVVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRLKPNSVTLVIFRCPLFLQFLVHRCSIKVPAAPIVFLFGLVLCFIRDTSIFGDLRFGPSRRISLVKIKWEDWMIGFVSAAIPQIPLLRFVSCSEVGVVLRWCSSGLQSWFLLWCLGNSLGRILGQFPIEILGVLLLFAGIELAMAAKDMLVCEAVSLTGSSGALGFFVGIVLGVMPVFHLTLKSIVASSSVFQLPFLSLENPAISLQTPVTANSDTLIRVRFSRGCNEAHFFIESRQENHLGLLVYWISKEK 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00312 728 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 235 473 - -
Gma07g00312 728 Pfam PPR repeat 247 274 IPR002885 -
Gma07g00312 728 Pfam PPR repeat 449 477 IPR002885 -
Gma07g00312 728 Pfam PPR repeat 421 447 IPR002885 -
Gma07g00312 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Gma07g00312 728 Gene3D Tetratricopeptide repeat domain 299 398 IPR011990 GO:0005515
Gma07g00312 728 Gene3D Tetratricopeptide repeat domain 399 493 IPR011990 GO:0005515
Gma07g00312 728 Gene3D Tetratricopeptide repeat domain 72 233 IPR011990 GO:0005515
Gma07g00312 728 Gene3D Tetratricopeptide repeat domain 234 298 IPR011990 GO:0005515
Gma07g00312 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Gma07g00312 728 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 17 235 - -
Gma07g00312 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Gma07g00312 728 TIGRFAM PPR: pentatricopeptide repeat domain 173 207 IPR002885 -
Gma07g00312 728 TIGRFAM PPR: pentatricopeptide repeat domain 247 280 IPR002885 -
Gma07g00312 728 TIGRFAM PPR: pentatricopeptide repeat domain 145 171 IPR002885 -
Gma07g00312 728 TIGRFAM PPR: pentatricopeptide repeat domain 348 382 IPR002885 -
Gma07g00312 728 TIGRFAM PPR: pentatricopeptide repeat domain 421 449 IPR002885 -
Gma07g00312 728 MobiDBLite consensus disorder prediction 1 28 - -
Gma07g00312 728 PANTHER BNAC05G11880D PROTEIN 17 235 - -
Gma07g00312 728 PANTHER BNAC05G11880D PROTEIN 235 473 - -
Gma07g00312 728 Pfam PPR repeat family 171 217 IPR002885 -
Gma07g00312 728 Pfam PPR repeat family 345 392 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00312 Gma-Chr7 2654972 2662293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00312 99 486 Glycoside Hydrolase AT3G49170 27.251 6.05e-43 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00312 - - gmx:100794338 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00312 07 2654972 2662293 Gma08g01913 08 17208733 17210619 ECH
Gma07g00312 07 2654972 2662293 Gma07g00312 07 2654972 2662293 ECH
Gma07g00312 07 2654972 2662293 Gma08g01913 08 17208733 17210619 GST