Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00293 ATGACTATGTTAAGGAATGAGGCCTATGGGGAACTGCTCATAAGATGTAGAAAACTCTATGGATTAGAGTATGTCATTGATGATATTGTTCGATCACTGCCTCACTCGCTGTTGCTCTCCCTAAAACCCAGAACTAGATCTAGGGTTTATTTTCCTTTTCATTTTGAATTTGAACAAGTTTTGCGTCTTCAAAGAAATAGGATGGGAGAATTGAAAGACACTGAGGCTTACGAGGAAGAGCTCATCGACTACGAAGAGGAAGAAGAAAAAGCTCCCGATTCTGCTAAACCCGTTGCTGAATCTGGCAAGAAGGGTTATGTTGGCATCCATAGTTCGGGATTTCGAGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCCATTGATTCGTCCACTACAATTTTGTTTGCTTCTTCATTAGTGCAACATGAATGCATCCCTCAAGCAATCTTAGGAATGGATGTCATTTGCCAAGCGAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCAACACTTCAGCAAGTTGATCCTGTTCCTGGTCAAGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGCCATGAATTTGAGAGGTTCAGCACATATCTTCCTGATATAAAGGCTGCTGTTTTCTATGGTGGTGTCAACATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGCCCACATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTAAAGAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTCGAATCACTTGATATGAGAAGAGATGTGCAAGAGATCTTCAAATTGACTCCCCACGATAAGCAAGTGATGATGTTTTCAGCTACACTCAGTAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAAATTTATGTCGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTCCAGCACTATATCAAATTGCAAGAGACAGAAAAGAATCGTAAATTGAATGATCTTCTCGATGCTCTGGACTTCAACCAAGTTGTTATATTTGTCAAAAGTGTAAGCAGAGCTGCTGAGTTGAACAAGTTGCTTGTGGAGTGTAACTTCCCATCTATCTGCATACATTCTGCAATGTCACAGGAAGAGAGATTGAAACGATACAAGGGCTTCAAAGAAGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGGATTGACATAGAACGTGTTAATATAGTTATTAACTATGACATGCCTGATTCTGCTGATACTTACTTGCACAGGGTGGGAAGAGCTGGTAGATTTGGCACGAAGGGTCTTGCAATTACTTTTGTGTCTTCTACTGCTGACTCTGAGGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGACATAAAGGAGCTTCCTGAACAAATTGACACTTCGACATATATGCCAAACTGA 1488 0.4113 MTMLRNEAYGELLIRCRKLYGLEYVIDDIVRSLPHSLLLSLKPRTRSRVYFPFHFEFEQVLRLQRNRMGELKDTEAYEEELIDYEEEEEKAPDSAKPVAESGKKGYVGIHSSGFRDFLLKPELLRAIDSSTTILFASSLVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQETEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00293 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 465 IPR027417 -
Gma07g00293 495 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 93 490 - -
Gma07g00293 495 Gene3D - 327 495 IPR027417 -
Gma07g00293 495 CDD DEADc_DDX39 111 320 - -
Gma07g00293 495 Pfam DEAD/DEAH box helicase 140 304 IPR011545 GO:0003676|GO:0005524
Gma07g00293 495 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 93 490 - -
Gma07g00293 495 SMART ultradead3 132 334 IPR014001 -
Gma07g00293 495 Gene3D - 108 326 IPR027417 -
Gma07g00293 495 Pfam Helicase conserved C-terminal domain 344 451 IPR001650 -
Gma07g00293 495 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 318 IPR014001 -
Gma07g00293 495 CDD SF2_C_DEAD 331 460 - -
Gma07g00293 495 SMART helicmild6 370 451 IPR001650 -
Gma07g00293 495 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 491 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00293 Gma-Chr7 2530063 2537594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00293 68 495 Eukaryotic Initiation Factors Gene Family AT5G11200 80.426 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00293 K12812 - gmx:100799082 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00293 07 2530063 2537594 Gma08g01936 08 17369246 17374431 ECH
Gma07g00293 07 2530063 2537594 Gma07g00293 07 2530063 2537594 ECH