Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00253 ATGATGGAGGACTCATGGGAAAACTGGCTCTCTCATCTGGGAATGAATGATGATTTTAGCTGCACCAACGCTGTATCCTCTGAAGAGATGGTTAGGTTGAACAATGATAGCTCAAATGTTGTAGCAGCGATTGGACCAAAAGTGGAATACACTGACTCCTATTTGAAGAGCAGTGAAGAGAAATTAGGAAGTTGTTATTGGCGTAAAAGGGGTGTGGAAAACCATGAGTTGGAGGCAAAGGCAAGGGATAATGAGAGAGGAACAAAAAGGGCAAGAACCTCTTCTGAGACACAATATCATGTGATGTCAGAGAGAAAAAGGAGACAGGATATAGCAGAGAAATTCATAGCACTCTCAGCTACTATACCTGGCTTGAAGAAGGTAGACAAGGCTACGGTGCTTCGGGAAGCCCTTAACTACATGCGACAACTTCAACAGCGTATAGCAGTGCTGGAAAAAGGGAGCAATAATAAAAGTATAAAGTCATTGATCATCACGAAATCACGTCTTTGTTCTGCTTCATGTGAAACAAACTCTAATGAAGTGCTCCCTCAAGTTGAAGCAAGAGGTTTAGAGAAGGAAGTACTCATTAGAATCTATTGTGAGAAACGAAAGGACATCATGCTCAAGCTTTTGGCCCTGCTAAAAGATGTTCATCTATCAATAGCCAGTAGCAGCATATTGCAATTTGGAAACTCTATTCTCAACATTATCATAATTGCTCAGATGAGTGAGAAATACAACTTGACGGTGAACGATTTGGTTAAGACCTTAAAGCAGATCTTTTGA 789 0.4081 MMEDSWENWLSHLGMNDDFSCTNAVSSEEMVRLNNDSSNVVAAIGPKVEYTDSYLKSSEEKLGSCYWRKRGVENHELEAKARDNERGTKRARTSSETQYHVMSERKRRQDIAEKFIALSATIPGLKKVDKATVLREALNYMRQLQQRIAVLEKGSNNKSIKSLIITKSRLCSASCETNSNEVLPQVEARGLEKEVLIRIYCEKRKDIMLKLLALLKDVHLSIASSSILQFGNSILNIIIIAQMSEKYNLTVNDLVKTLKQIF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00253 262 SMART finulus 101 150 IPR011598 GO:0046983
Gma07g00253 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 155 IPR036638 GO:0046983
Gma07g00253 262 Coils Coil 134 154 - -
Gma07g00253 262 Pfam Helix-loop-helix DNA-binding domain 100 145 IPR011598 GO:0046983
Gma07g00253 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 144 IPR011598 GO:0046983
Gma07g00253 262 Gene3D - 90 158 IPR036638 GO:0046983
Gma07g00253 262 PANTHER BHLH TRANSCRIPTION FACTOR 7 262 - -
Gma07g00253 262 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 7 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00253 Gma-Chr7 2195705 2198902 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00253 1 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.333 2.87e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma07g00253 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00253 - - gmx:100778916 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00253 07 2195705 2198902 Gma08g01978 08 17775761 17778335 GST
Gma13g03302 13 46971480 46975791 Gma07g00253 07 2195705 2198902 PCT
Gma07g00253 07 2195705 2198902 Gma13g03304 13 46992662 46997680 PCT