Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00228 ATGTCAGGTGAAGAGGGTGTCATTGCAGTTGAGCCAGCTGCTGCTGCTGCTGCCATCCCAGGCGAGCCAATGGATATCATGACTGCCTTACAACTTGTGCTCAGAAAATCTCTGGCTTATGGTGGTTTGTCGCGTGGCCTTCATGAAGGTGCAAAAGTGATTGAGAAGCATGCTGCACAACTCTGTGTTCTTGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTGGTTAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCGAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCCGAAGGAAAAGCAAGGAAGGTTACTGGTTGCTCCTGTGTGGTTGTGAAGGATTTCGGTGAGGAGCATGAAGCCTATAACGTCGTTCTGCAGCATGTGAAATCTCAATGA 432 0.4884 MSGEEGVIAVEPAAAAAAIPGEPMDIMTALQLVLRKSLAYGGLSRGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00228 143 SUPERFAMILY L30e-like 23 141 IPR029064 -
Gma07g00228 143 PRINTS Ribosomal protein S12E family signature 33 46 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma07g00228 143 PRINTS Ribosomal protein S12E family signature 47 63 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma07g00228 143 PRINTS Ribosomal protein S12E family signature 88 109 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma07g00228 143 PRINTS Ribosomal protein S12E family signature 113 126 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma07g00228 143 PANTHER 40S RIBOSOMAL PROTEIN S12 1 143 - -
Gma07g00228 143 ProSitePatterns Ribosomal protein S12e signature. 29 47 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma07g00228 143 PANTHER 40S RIBOSOMAL PROTEIN S12 1 143 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma07g00228 143 Gene3D - 10 143 IPR029064 -
Gma07g00228 143 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 29 122 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00228 Gma-Chr7 1883413 1885369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00228 19 143 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 5.68e-66 195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00228 07 1883413 1885369 Gma08g01999 08 17988093 17990705 GST
Gma15g00039 15 346891 347481 Gma07g00228 07 1883413 1885369 PCT
Gma07g00228 07 1883413 1885369 Gma15g00039 15 346891 347481 PCT