LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma07g00189	ATGCCTGGTGTTTTAGCCAGGAGTTTTCAACTGCAGAATGATCAGAGTAATCTGAAGCAGGGAGACACCAAATTATCTGAAATGTTCTTAAAGGACAGGATAAACTCGATTGATTTCTTATCCAGCAGTAAATGTTTATCGTTGGTCTGTTGCATAAATCTGAGGCAGGGGAAATATCAGAAgggccgaagagcaattttaatggGTAATCACAAACCCAATGGAGACGGGCTTATGATTTATGACCCAAGAGTGGTCTCATCTTCATCGACGGTCAGAATAAATCTTGGAAGCAAAAGACGAATCAGAACCGTCGAGTGTGAGAAGCCCCAGGGCACAGAGCAACTACAAAACCCTACTTATCTCACTTTACAATGTTGTCAAGCCTGCCGAGAAAACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGAGATGGAAGCAAGAACTCGATGCTGCCAAGAAGAAGAGAGCCGAGAGCCGCAAACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTCTATGTGGATCCAGAGGCTAAGCTGTTGTTTATTATTCGCATTCGTGGTATTAATGCCATGGACCCCAAATCAAGGAAGATCCTGCAGTTGTTGCGATTGAGACAGATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCGTATGTGACTTATGGATACCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGACCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGCTTAAAGAAGAAGAGAAACCATTATGTTGAGGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTGA	1104	0.4284	MPGVLARSFQLQNDQSNLKQGDTKLSEMFLKDRINSIDFLSSSKCLSLVCCINLRQGKYQKGRRAILMGNHKPNGDGLMIYDPRVVSSSSTVRINLGSKRRIRTVECEKPQGTEQLQNPTYLTLQCCQACRENPSSLAVTQEANPIHSSRWKQELDAAKKKRAESRKLIYNRAKQYAKEYDHQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLMKQRTALTDNSIIEQALGKYGIISTEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN	367

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma07g00189	367	Pfam	Ribosomal L30 N-terminal domain	146	204	IPR012988	-
Gma07g00189	367	Gene3D	-	312	367	IPR036919	-
Gma07g00189	367	Gene3D	-	208	311	IPR036919	-
Gma07g00189	367	CDD	Ribosomal_L7_archeal_euk	208	367	IPR035808	-
Gma07g00189	367	ProSitePatterns	Ribosomal protein L30 signature.	227	259	IPR018038	-
Gma07g00189	367	SUPERFAMILY	Ribosomal protein L30p/L7e	208	367	IPR036919	-
Gma07g00189	367	PANTHER	60S RIBOSOMAL PROTEIN L7-RELATED	123	367	-	-
Gma07g00189	367	PANTHER	60S RIBOSOMAL PROTEIN L7	123	367	IPR039699	-
Gma07g00189	367	Coils	Coil	173	193	-	-
Gma07g00189	367	Pfam	Ribosomal protein L30p/L7e	209	259	IPR016082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma07g00189	Gma-Chr7	1590282	1596259	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma07g00189	152	367	Cytoplasmic Ribosomal Protein Gene Family	AT3G13580	85.648	1.98e-138	392

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma07g00189	K02937		-	gmx:100305682	414.075

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma07g00189	07	1590282	1596259	Gma07g00189	07	1590282	1596259	ECH

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