Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00165 ATGACACAACAAACAACAACCTCTTCCTCCTCACATTCGGGCCCAAGGGCCCAGGCCCAGAAACAGAGCAAGAGGCCCAGGGACTGCAgcaagcacccggtgtaccacggcgtgcggaagcggaactggggcaaatgggtgtccgaaatccgggagccacgcaagaagtcccgaatctggctcggaacattctccactcccgaaatggcggcgcgagcccacgacgtggcggccctcaccatcaagggccagtcagcaatcctcaacttccccgaaattgcagacctgctccctaggcccgtcacgtgctccccacgtgacatccagaccgcggccacggccgcggcctccatggttaagttcgaccctgtgacACAATCCTCAGACTCGGAGACTCCAGAGTCTTCGGAGCTGAGCGAGATTGTCGAACTTCCCAACATTGAAGACAGCAGCGTTGACTCGACACCGGAGTTCGTCTTGGTCGATGTTGTTGACAGTTGGGTGTTTCCCCCAATGGGAATGGGTTCAGAGGGAATCGAGTTCTGTGCCGCTTTTTCTGATGAGTTATTTCCGCAACAGAGTTTTATTGGTTCCGAGATAGAGATACTACCCATTTGGGATTGA 624 0.274 MTQQTTTSSSSHSGPRAQAQKQSKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGQSAILNFPEIADLLPRPVTCSPRDIQTAATAAASMVKFDPVTQSSDSETPESSELSEIVELPNIEDSSVDSTPEFVLVDVVDSWVFPPMGMGSEGIEFCAAFSDELFPQQSFIGSEIEILPIWD 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00165 207 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Gma07g00165 207 MobiDBLite consensus disorder prediction 1 35 - -
Gma07g00165 207 MobiDBLite consensus disorder prediction 1 20 - -
Gma07g00165 207 MobiDBLite consensus disorder prediction 21 35 - -
Gma07g00165 207 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Gma07g00165 207 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Gma07g00165 207 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Gma07g00165 207 CDD AP2 35 92 IPR001471 GO:0003700|GO:0006355
Gma07g00165 207 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Gma07g00165 207 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Gma07g00165 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 188 - -
Gma07g00165 207 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Gma07g00165 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00165 Gma-Chr7 1420195 1421338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00165 18 171 AP2-EREBP Transcription Factor Family AT5G11590 58.192 2.10e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma07g00165 AP2 8.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00165 K09286 - gmx:100804056 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00165 07 1420195 1421338 Gma07g00165 07 1420195 1421338 ECH
Gma07g00165 07 1420195 1421338 Gma08g01855 08 16719407 16720557 GST