Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00084 ATGGAGATGAAGGGTTTTATGTTCTACCAACAACAGCAACAGCAACAAATAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCCTCAGGTAACAGAACTGAAATTGGAACCAGCTACATGGCTCCACCACCAACTCAGATTCAACCACCAAAGAAAAAAAGAAACCTCCCTGGCAATCCAGACCCTGATGCTGAGGTTATAGCCTTGTCCCCCAAGAGTCTTCTTGCCACAAACAGGttcatttgtgagatctgcaacaaaggatttcaaagagaccagaaccttcagcttcacagaagagggcacaatttgccatggaagctgaagcagagaacaaGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAGCCAAGTTGTGTGCATCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAACCTGTGGCACTAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTGGCAGAGGAGAGTGCAAGAGCCATCGCAAACCCACTTCTTCCCCCACAACAACAACAATCTTCTTCCTCTCACATGAGTACTCTCCAAACCCAATTCAACCCTCAAAACCTCCATGCCTTCCCATTGAAAAAAGAAATGCCCCCTTGGCTTGGCCCACCAGCAACAGTAGTTGTTGATCATCATCTGTCTTCATCCTCATCCATAATGTTCTCTCCTCCACACCAAGAAAACCCTAACCCTAGTCTTGGTCCCACTCTTGCTGCCTACCAAACAGTCCCTAATCCACACATGTCAGCCACTGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCCACACCAGCCATGACTGGGCCCCACCATCATGCTCACGTGTCTCATTTTGGCTTGAACTTGTCCTCACGTGAAGACACCACCACCACCACCCCTTCAACAACAACTACTAATGCTAACACTGCTACAGTGTTCAGCCATGGCTTATTATCATCATCACCATTGGGGAATAAAGCTGCTGCTGCTGCTGCTGTGTCTTCTTCCGCACCATCCCTTCTTCACGATGTTATCAACTCTTTCTCTTCTCCTTCTGCCTTTGAAGGAACCCCTTTTGAGGATGCATTCATTCAGAGCTCAAAGAAACTAGATGATGATCATAACTTGTATTTGCATGACACATTCTCAAAAACAAGTGGTGCAGCTGGGAATAATATTAATGAAGGGTTGACCAGAGATTTCTTGGGTCTTAGGCCCCTCTCTCATGCTGATATTCTCACCATCGCTGGCATTGGAAATTGCATCCATGATCAGCAGAACCAGTCTCAAAAGCCATGGCAAGGTTAG 1497 0.4402 MEMKGFMFYQQQQQQQIVEENMSNLTSASGEASASSGNRTEIGTSYMAPPPTQIQPPKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAIANPLLPPQQQQSSSSHMSTLQTQFNPQNLHAFPLKKEMPPWLGPPATVVVDHHLSSSSSIMFSPPHQENPNPSLGPTLAAYQTVPNPHMSATALLQKAAQMGATMSRSGSTPAMTGPHHHAHVSHFGLNLSSREDTTTTTPSTTTTNANTATVFSHGLLSSSPLGNKAAAAAAVSSSAPSLLHDVINSFSSPSAFEGTPFEDAFIQSSKKLDDDHNLYLHDTFSKTSGAAGNNINEGLTRDFLGLRPLSHADILTIAGIGNCIHDQQNQSQKPWQG 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00084 498 Gene3D Classic Zinc Finger 141 221 - -
Gma07g00084 498 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 24 483 - -
Gma07g00084 498 MobiDBLite consensus disorder prediction 320 370 - -
Gma07g00084 498 Pfam Zinc-finger double-stranded RNA-binding 87 109 IPR022755 -
Gma07g00084 498 MobiDBLite consensus disorder prediction 351 370 - -
Gma07g00084 498 MobiDBLite consensus disorder prediction 11 49 - -
Gma07g00084 498 MobiDBLite consensus disorder prediction 320 335 - -
Gma07g00084 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Gma07g00084 498 MobiDBLite consensus disorder prediction 11 71 - -
Gma07g00084 498 SUPERFAMILY beta-beta-alpha zinc fingers 86 183 IPR036236 -
Gma07g00084 498 Gene3D Classic Zinc Finger 68 134 - -
Gma07g00084 498 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Gma07g00084 498 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 483 - -
Gma07g00084 498 SMART c2h2final6 128 158 IPR013087 -
Gma07g00084 498 SMART c2h2final6 163 183 IPR013087 -
Gma07g00084 498 SMART c2h2final6 87 109 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00084 Gma-Chr7 693425 696474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00084 22 498 IDZ Gene Family AT3G13810 46.416 3.84e-133 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma07g00084 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00084 K25870 - gmx:100785687 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00084 07 693425 696474 Gma08g01775 08 15791393 15796765 GST
Gma13g03133 13 45484702 45487500 Gma07g00084 07 693425 696474 PCT
Gma15g00232 15 2028618 2031597 Gma07g00084 07 693425 696474 PCT
Gma07g00084 07 693425 696474 Gma13g03133 13 45484702 45487500 PCT
Gma07g00084 07 693425 696474 Gma15g00232 15 2028618 2031597 PCT