Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00028 atgaggCCGATGCAACTGCCACCGCCTTCCGGTTCCGGGGCCAACCCTGCCCCCACCAACAACAGCAAGGACCGTCCCCAGCGCCGCCGCAAGGACCTCACGCTGCCGCTGCCGCAGCGGGACACCAACTTGGCGGTGCCGCTTCCTCTGCCCCCATCGACGGCTTCTGCTGCGGCGGCGCAGCAGGTGATCCCCTTCTCGGAGCTGGAGAGACTGAACCGCATCGGGAGCGGGAGCGGCGGGACGGTGTACAAGGTGGTCCACCGCACCAGCGGGCGCGTGTACGCGCTGAAGGTGATATACGGTCACCACGAGGAGTCCGTGCGGCGGCAGATCCACCGGGAAATCCAGATCCTCCGTGACGTGAACGATCCGAACGTGGTGAAGTGCCACGAGATGTACGATCAGAACAGCGAAATCCAGGTGCTGCTGGAGTTCATGGACGGAGGGTCACTGGAGGGGAAACACATCCCGCAGGAGCAGCAGCTGGCAGATCTGTCTCGGCAGATTCTGCGGGGGCTGGCGTACCTACACCGGCGGCACATCGTGCACAGGGACATCAAGCCCTCGAATCTGCTGATAAACTCGCGGAAGCAGGTGAAGATCGCTGACTTCGGGGTGGGTCGGATTCTGAATCAGACGATGGATCCGTGCAATTCATCGGTGGGGACGATCGCCTACATGAGTCCGGAGAGGATCAATACGGACATAAACGACGGGCAATACGACGCTTACGCGGGGGACATATGGAGCTTTGGGGTTAGCATACTGGAGTTCTACATGGGAAGGTTCCCCTTCGCTGTAGGGAGGCAGGGCGATTGGGCCAGTCTAATGTGCGCCATTTGTATGTCTCAGCCTCCAGAGGCTCCTCCTTCTGCTTCACCTCACTTCAAGGATTTCATCCTCCGCTGTTTGCAGCGCGATCCCTCTCGCCGCTGGTCTGCTTCCAGGCTCCTCGAACACCCCTTCATTGCTCCACCGCTGCCCAACCATAATCAGACTCCTCCCAACCTCCATCAGCTACTCCCTCCTCCGCCAAGGCCTCTTCCTTCCTAG 1056 0.6042 MRPMQLPPPSGSGANPAPTNNSKDRPQRRRKDLTLPLPQRDTNLAVPLPLPPSTASAAAAQQVIPFSELERLNRIGSGSGGTVYKVVHRTSGRVYALKVIYGHHEESVRRQIHREIQILRDVNDPNVVKCHEMYDQNSEIQVLLEFMDGGSLEGKHIPQEQQLADLSRQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPSASPHFKDFILRCLQRDPSRRWSASRLLEHPFIAPPLPNHNQTPPNLHQLLPPPPRPLPS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00028 351 MobiDBLite consensus disorder prediction 328 351 - -
Gma07g00028 351 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 25 345 - -
Gma07g00028 351 MobiDBLite consensus disorder prediction 325 351 - -
Gma07g00028 351 SUPERFAMILY Protein kinase-like (PK-like) 66 346 IPR011009 -
Gma07g00028 351 Gene3D Phosphorylase Kinase; domain 1 53 148 - -
Gma07g00028 351 CDD PKc_MAPKK_plant_like 67 324 - -
Gma07g00028 351 SMART serkin_6 69 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma07g00028 351 Pfam Protein kinase domain 70 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma07g00028 351 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 25 345 - -
Gma07g00028 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Gma07g00028 351 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Gma07g00028 351 ProSiteProfiles Protein kinase domain profile. 69 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma07g00028 351 Gene3D Transferase(Phosphotransferase) domain 1 151 334 - -
Gma07g00028 351 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00028 Gma-Chr7 253290 255321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00028 1 340 MAP Kinase Kinase Gene Family AT1G51660 69.359 2.72e-173 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gma07g00028 Pkinase 2.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00028 K13413 - gmx:100786390 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00028 07 253290 255321 Gma07g00028 07 253290 255321 ECH
Gma07g00028 07 253290 255321 Gma08g02056 08 18446533 18448060 GST