Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00025 ATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAATTGCTGATTCACAATGGTAAGGTTTTGAAAGATGAAACTACATTAGTAGAGAACAAAGTCTCTGAAGATGGTTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAATGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAATTGGGACAGAGACACAGTTAGTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTATAGATTATTTGTATTCTGGAATCCCTGAAGCAGCCGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGTATGTCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCACAGGAGACAATTTCTAGTACTGGTGCTGGACTTGGATCGCTGGACTTCCTTAGAAATAACCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGGTATTCATTTTCTCGATCACCTTCCTGCCTTTTGGTCATTTCTTGATGTCTAATGATTTCCACTTTCCCTTACAGCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGAGGGTTCTGAAGGTGATATGTTTGAGCAGCCTGAGCAAGACATGCCCCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCGGTGATAGAAGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTATTTATTGGAGAATGCTGGAGACTTTGAGGATTAA 1167 0.4387 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKTSGSAAASSVQPASNPATTVSMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQVFIFSITFLPFGHFLMSNDFHFPLQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00025 388 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 264 - -
Gma07g00025 388 TIGRFAM rad23: UV excision repair protein Rad23 1 266 IPR004806 GO:0006289
Gma07g00025 388 CDD UBA1_Rad23_plant 142 191 - -
Gma07g00025 388 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 264 - -
Gma07g00025 388 SUPERFAMILY UBA-like 322 385 IPR009060 GO:0005515
Gma07g00025 388 Gene3D - 228 269 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma07g00025 388 Gene3D - 285 320 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma07g00025 388 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 146 189 IPR015940 -
Gma07g00025 388 Gene3D - 1 80 - -
Gma07g00025 388 SMART uba_6 344 381 IPR015940 -
Gma07g00025 388 SMART uba_6 148 188 IPR015940 -
Gma07g00025 388 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gma07g00025 388 Gene3D - 141 191 - -
Gma07g00025 388 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 284 387 - -
Gma07g00025 388 Gene3D - 335 383 - -
Gma07g00025 388 SUPERFAMILY XPC-binding domain 286 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma07g00025 388 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 342 382 IPR015940 -
Gma07g00025 388 PANTHER UV EXCISION REPAIR PROTEIN RAD23 284 387 - -
Gma07g00025 388 Pfam XPC-binding domain 286 318 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gma07g00025 388 Pfam XPC-binding domain 238 265 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gma07g00025 388 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Gma07g00025 388 Pfam UBA/TS-N domain 148 186 IPR015940 -
Gma07g00025 388 Pfam UBA/TS-N domain 344 379 IPR015940 -
Gma07g00025 388 SMART ubq_7 1 75 IPR000626 GO:0005515
Gma07g00025 388 PRINTS DNA repair protein Rad23 signature 289 311 IPR004806 GO:0006289
Gma07g00025 388 PRINTS DNA repair protein Rad23 signature 370 385 IPR004806 GO:0006289
Gma07g00025 388 PRINTS DNA repair protein Rad23 signature 355 369 IPR004806 GO:0006289
Gma07g00025 388 PRINTS DNA repair protein Rad23 signature 338 354 IPR004806 GO:0006289
Gma07g00025 388 MobiDBLite consensus disorder prediction 81 129 - -
Gma07g00025 388 SUPERFAMILY XPC-binding domain 235 265 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma07g00025 388 SUPERFAMILY Ubiquitin-like 1 87 IPR029071 -
Gma07g00025 388 CDD Ubl_Rad23 1 74 - -
Gma07g00025 388 SUPERFAMILY UBA-like 145 196 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00025 Gma-Chr7 221325 227889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00025 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 3.77e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00025 K10839 - gmx:100778187 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00025 07 221325 227889 Gma07g00025 07 221325 227889 ECH
Gma07g00025 07 221325 227889 Gma08g02059 08 18483067 18489612 GST
Gma13g03329 13 47240649 47245578 Gma07g00025 07 221325 227889 PCT
Gma15g00021 15 206620 214585 Gma07g00025 07 221325 227889 PCT
Gma07g00025 07 221325 227889 Gma13g03329 13 47240649 47245578 PCT
Gma07g00025 07 221325 227889 Gma15g00021 15 206620 214585 PCT