LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma07g00021	ATGCCCGCTGTTTATGGAGCTCGCTTGACCACCTTCGAAGACTCCGAGAAGGAGAGTGAATACGGTTACGTTCGCAAGGTTTCAGGACCCGTCGTCGTTGCGGATGGCATGGCTGGTGCTGCTATGTATGAACTCGTGCGTGTTGGTCATGATAATCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGCACAAGCCTTTGTCCGTGGAGTTGGGTCCTGGAATATTGGGGAATATTTTTGATGGAATTCAGAGGCCTTTGAAAACTATTGCTAAAAGATCTGGTGATGTCTATATTCCTCGTGGTGTCTCTGTTCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTACTGTTTTTGAGAACAGTCTAATGCAACACCATATTGCACTTCCTCCTGATAACATGGGAAAGATTACCTACATTGCACCACCTGGCCAATATTCCTTACAGGATACTGTATTGGAACTTGAGTTTCAAGGTGTCAAAAAGAAATTCACTATGCTTCAGACTTGGCCTGTACGTACACCCAGGCCTGTTGCATCAAAACTTGCAGCTGATACTCCTCTTCTTACTGGTCAGCGTGTTCTTGATGCCCTTTTCCCCTCAGTTCTTGGCGGGACTTGTGCCATTCCTGGTGCTTTTGGTTGTGGTAAAACAGTCATTAGTCAGGCTCTTTCTAAGTATTCCAATTCTGATGCTGTTGTATATGTCGGCTGTGGGGAACGTGGAAACGAAATGGCAGAGGCATTTGGTCAAACTAATTCAATGATTGTTCAGGTTCTAATGGACTTTCCCCAACTTACAATGACATTACCTGATGGTCGTGAAGAATCTGTCATGAAGCGCACAACACTAGTGGCTAACACTTCAAACATGCCAGTGGCTGCTCGTGAAGCTTCAATTTATACAGGAATCACATTAGCTGAGTATTTTAGAGATATGGGTTATAATGTCAGTATGATGGCAGATTCTACATCTAGATGGGCAGAAGCATTGCGTGAAATCTCTGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCATACCTTGCTGCACGTTTAGCCTCTTTCTATGAACGTGCTGGGAAGGTAAAATGTCTAGGAGGCCCTGAACGTACAGGTAGTGTAACAATTGTTGGTGCTGTTTCGCCACCTGGAGGAGATTTCTCAGACCCTGTGACATCTGCAACCCTCAGCATAGTTCAGGTTTTCTGGGGGTTGGACAAAAAGCTTGCCCAGAGGAAGCACTTTCCTTCTGTAAACTGGCTTATTTCTTATTCAAAATACTCAACGGCACTTGAAACCTTTTATGAGCAATTTGATCCAGATTTTATAAACATTAGGACAAAGGCTCGTGAAGTTCTGCAAAGAGAAGATGACCTGAATGAAATTGTCCAGCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCTCAAAATGCCTTTACACCATATGATAAATTTTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTATCAAGCATCGTATGGGAGATCTGTTCTACCGATTAGTGTCTCAGAAATTTGAGGATCCAGCAGAAGGGGAAGCTGCTTTGGTTGCTAAATTTCAGAAGTTACACGAGGACCTGACTAATGGTTTCCGCAACCTTGAGGACGAAACCCGATGA	1905	0.4388	MPAVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHIALPPDNMGKITYIAPPGQYSLQDTVLELEFQGVKKKFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEAFGQTNSMIVQVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALETFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGSDGQKISYTLIKHRMGDLFYRLVSQKFEDPAEGEAALVAKFQKLHEDLTNGFRNLEDETR	634

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma07g00021	634	Coils	Coil	612	632	-	-
	Gma07g00021	634	SUPERFAMILY	C-terminal domain of alpha and beta subunits of F1 ATP synthase	482	564	-	-
	Gma07g00021	634	PANTHER	V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A	3	633	IPR022878	GO:0046034\|GO:0046961
	Gma07g00021	634	Gene3D	-	91	468	IPR027417	-
	Gma07g00021	634	SUPERFAMILY	N-terminal domain of alpha and beta subunits of F1 ATP synthase	17	89	IPR036121	GO:0046034\|GO:1902600
	Gma07g00021	634	Pfam	ATPsynthase alpha/beta subunit N-term extension	102	223	IPR031686	-
	Gma07g00021	634	CDD	V_A-ATPase_A	88	471	-	-
	Gma07g00021	634	ProSitePatterns	ATP synthase alpha and beta subunits signature.	460	469	IPR020003	GO:0005524
	Gma07g00021	634	Hamap	V-type ATP synthase alpha chain [atpA].	19	633	IPR022878	GO:0046034\|GO:0046961
	Gma07g00021	634	Pfam	ATP synthase alpha/beta family, nucleotide-binding domain	232	469	IPR000194	GO:0005524
	Gma07g00021	634	Gene3D	-	134	205	-	-
	Gma07g00021	634	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	202	473	IPR027417	-
	Gma07g00021	634	Gene3D	-	20	89	IPR023366	-
	Gma07g00021	634	Gene3D	-	470	633	IPR024034	-
	Gma07g00021	634	TIGRFAM	V-ATPase_V1_A: V-type ATPase, A subunit	20	622	IPR005725	GO:0033180\|GO:0046961\|GO:1902600
	Gma07g00021	634	CDD	ATP-synt_V_A-type_alpha_N	21	87	-	-
	Gma07g00021	634	PANTHER	V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A	3	633	-	-
	Gma07g00021	634	Pfam	ATP synthase alpha/beta family, beta-barrel domain	25	85	IPR004100	GO:0046034\|GO:1902600
	Gma07g00021	634	CDD	ATP-synt_V_A-type_alpha_C	486	592	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma07g00021	Gma-Chr7	197282	202083	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma07g00021	1	634	Primary Pumps ATPases(2)	AT1G78900	91.640	0.0	1201

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma07g00021	K02145		-	gmx:100814929	1233.01

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma07g00021	07	197282	202083	Gma07g00021	07	197282	202083	ECH
	Gma07g00021	07	197282	202083	Gma08g02064	08	18517941	18523531	GST