Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02861 ATGAATGTGACAAACAAACCAAACCCATATGGTTCCACCAATGGGTTTCAGTCTCTGCTTCAACAAAATGGGTGGGAACAGGGATCATCTAGACTCAGACCCACTAAGCTTTACCCTGCACCAACGGCTCGCTACCAGGACATTGTTCGTGATGCAAACCTCTTCTGGGGAACGCTTCAAGCTTTTCACAAAACACTTGGCACCAAATATAAGATTTCTACTGTGGGAGGAACGCCACTTGATCTACATCGTCTTTTTGTCGAAGTTACATCTCGCGGTGGGATTGAAAAGGTGATTGTTGATCGTAAGTGGAAGGAAGTGATTCTGACCTTCAATTTCAAAGATACCATAACCAATGCATCATTTATGGTGCGCAAATCCTACCTCTCGATGCTTTATCACTTTGAGCAAGTGTATTATTTTGGGAGGCAAGGCATTCCTCCCACAACACCTGATCTTATGATTAGAGGCCAATCATGCCAACCCTATAGCTCCACAACCATTCCAGAAGTTGCTGCTGTGAATGATTCACCTGTTCAGAGTACTCCAGTACAGGCACATGATGATATGGTTTCTGGAACAATTGATGCGAAATTTGATGTTGGATATGTAGTTACAGTGACTCTAGGTTCTGAGCAGCTGCAAGGTGTCCTGTTTCATGTTCCTGATAACGTGTCCCAGAGTTCTCATGCCGAAGGCACATCTAGTTCACAGAATCTTGGTGATGACACGTCTAATTTACAGAGTCGAAAGAGAGCAAAATATGCACCACGTGATCCATTTCGGCCAAAGTCAAACAGGAGCGGTTACAACTTTTTCTTTGCTGAAAATTATGCCAGGCTGAAGCCCTCGTATCATGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGATAAGAGATAAGGAAAGATACAGGACTGAACTGATGGAGTACAAATCCAATAATTCAACTCCAAATGCTCAATAG 1020 0.4324 MNVTNKPNPYGSTNGFQSLLQQNGWEQGSSRLRPTKLYPAPTARYQDIVRDANLFWGTLQAFHKTLGTKYKISTVGGTPLDLHRLFVEVTSRGGIEKVIVDRKWKEVILTFNFKDTITNASFMVRKSYLSMLYHFEQVYYFGRQGIPPTTPDLMIRGQSCQPYSSTTIPEVAAVNDSPVQSTPVQAHDDMVSGTIDAKFDVGYVVTVTLGSEQLQGVLFHVPDNVSQSSHAEGTSSSQNLGDDTSNLQSRKRAKYAPRDPFRPKSNRSGYNFFFAENYARLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGIRDKERYRTELMEYKSNNSTPNAQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02861 339 SMART hmgende2 262 331 IPR009071 -
Gma06g02861 339 Pfam HMG (high mobility group) box 263 330 IPR009071 -
Gma06g02861 339 CDD ARID_HMGB9-like 51 136 IPR045303 GO:0003677
Gma06g02861 339 MobiDBLite consensus disorder prediction 226 264 - -
Gma06g02861 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 32 338 - -
Gma06g02861 339 SMART ARID_2 46 136 - -
Gma06g02861 339 MobiDBLite consensus disorder prediction 247 261 - -
Gma06g02861 339 Pfam ARID/BRIGHT DNA binding domain 53 136 IPR001606 GO:0003677
Gma06g02861 339 CDD HMGB-UBF_HMG-box 263 326 - -
Gma06g02861 339 MobiDBLite consensus disorder prediction 226 246 - -
Gma06g02861 339 ProSiteProfiles ARID domain profile. 49 140 IPR001606 GO:0003677
Gma06g02861 339 Gene3D High mobility group box domain 246 338 IPR036910 -
Gma06g02861 339 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 263 330 IPR009071 -
Gma06g02861 339 SUPERFAMILY ARID-like 48 149 IPR036431 GO:0003677
Gma06g02861 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 32 338 - -
Gma06g02861 339 SUPERFAMILY HMG-box 262 333 IPR036910 -
Gma06g02861 339 SMART bright_3 50 141 IPR001606 GO:0003677
Gma06g02861 339 Gene3D - 42 145 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02861 Gma-Chr6 52432051 52436533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02861 43 335 ARID Transcription Factor Family AT3G13350 48.322 1.27e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma06g02861 ARID 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02861 - - gmx:100789037 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01032 04 12065140 12070080 Gma06g02861 06 52432051 52436533 GST