Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02779 ATGTCGAAAAGCAAAGCGAAAAAGAAAAATAGTGATAGCGATGAAGACGACGACGTTTTCTACTACCGCTATAGCAGCGTCAACCCTACCCAAACTCAAACTCAAACCCAAACCCTACAACACAATCCAAATCCCAAATCCAACAACAACAAGGGATCTTCGTCTTCTTCCTTGGCTCCGTCGAAATCAACGTTGTACGTTTCGAACATCGACTACTCCCTCACGAACTCCGACCTCCACACGCTCTTCTCCACCTTCGGCCGCGTCGCGCGCGTCACCGTCCTCAAGGACCGCCACACGCGCCTCAGCCGCGGCGTGGCCTTCGTCCAGTTCGTGTCGCGCCACGACGCGCACGATGCGGCCGCGCAGATGGACGGGAAGGTGCTCAACGGCCGCACCCTCGCCGCCTCCATCGCCGCCGACAACGGCCGCGCCCCCGAGTTCATCCGCAAGCGCGTCTACcgcgacaccgatcgctgcttcgagtgcggagagcaagggcacctctcgtacgactgcccgcgtaatcagCTCGGCCCCCGCCAACGCCCCGAGCCTAAACGCCCCCGCCGTGGGCCCCACCCCCACCCCCACCGCCATCGCCATAACGACAATGACGATGCCGGAGGCGACGATGACGATTATGACGGCGGGGCTGAGCGGTTTGAGGATGATAATTGGGCTTCTGTTGTGGATGACGGTGCTGGTGAGAGGCTCTTGGCGGGAAACCAACATGATGGTGATGGTGTTGTGGCTGGAAAGAGTAAGAAGAAAAAGAACAAGGGTGAAGGAAGTAATCTCAGTTCCTTGGTGGGAAAATCCTAA 825 0.5297 MSKSKAKKKNSDSDEDDDVFYYRYSSVNPTQTQTQTQTLQHNPNPKSNNNKGSSSSSLAPSKSTLYVSNIDYSLTNSDLHTLFSTFGRVARVTVLKDRHTRLSRGVAFVQFVSRHDAHDAAAQMDGKVLNGRTLAASIAADNGRAPEFIRKRVYRDTDRCFECGEQGHLSYDCPRNQLGPRQRPEPKRPRRGPHPHPHRHRHNDNDDAGGDDDDYDGGAERFEDDNWASVVDDGAGERLLAGNQHDGDGVVAGKSKKKKNKGEGSNLSSLVGKS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02779 274 Pfam Zinc knuckle 159 174 IPR001878 GO:0003676|GO:0008270
Gma06g02779 274 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 260 - -
Gma06g02779 274 Gene3D - 22 151 IPR012677 -
Gma06g02779 274 ProSiteProfiles Zinc finger CCHC-type profile. 159 175 IPR001878 GO:0003676|GO:0008270
Gma06g02779 274 Gene3D - 152 197 - -
Gma06g02779 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Gma06g02779 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Gma06g02779 274 MobiDBLite consensus disorder prediction 1 60 - -
Gma06g02779 274 SMART rrm2_1 64 137 IPR003954 GO:0003676
Gma06g02779 274 MobiDBLite consensus disorder prediction 24 60 - -
Gma06g02779 274 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 260 IPR044598 GO:0000398|GO:0005689
Gma06g02779 274 SUPERFAMILY Retrovirus zinc finger-like domains 143 176 IPR036875 GO:0003676|GO:0008270
Gma06g02779 274 MobiDBLite consensus disorder prediction 1 21 - -
Gma06g02779 274 MobiDBLite consensus disorder prediction 171 274 - -
Gma06g02779 274 SMART c2hcfinal6 159 175 IPR001878 GO:0003676|GO:0008270
Gma06g02779 274 SUPERFAMILY RNA-binding domain, RBD 27 146 IPR035979 GO:0003676
Gma06g02779 274 SMART rrm1_1 64 137 IPR000504 GO:0003723
Gma06g02779 274 CDD RRM_ZCRB1 64 139 IPR034219 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02779 Gma-Chr6 51640545 51642178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02779 63 139 Eukaryotic Initiation Factors Gene Family AT4G34110 36.364 2.50e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02779 K13154 - gmx:100814914 392.119