Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02740 ATGAGTGATATAAGGAAGTGGTTCATGAAAACACATGACAAGGGCAACAATGCCGCTTCTTCCAAGCCTTCTTCCGATAAACCCCAGTCCGAGAAAACGGTGGCTGGAGGTCAGGAAAGTTCAGGGAGGAGGATAACTAGCAAATATTTTAATTCGAACAAGCAAAAGGGGAAAGATGAGAAAGAAAAGCAGGAGCTCCCTGCTAAAAGAAAGAATGCGAAGGACAGTGAGGAAATTCATGAAGACGATGGAGATGACTCTGTCTTGCCCACTAATAAAAAGAAGTTAGCTGACACCACTCCAACAAAAAAATTGAAGAGTGGATCAGGTAGGGGGATTCCAAAGAAATCTGCAGTTTTGGAAGAAAGTGATGAAGATGATGACAAAGATGCTGTGTCTGCTGCTAAATCTGCTGGAAGGGGTGGTGGTGGTGGTGGAAGAGGAGCACCGGGGCGATCAACTGGTGGGAGAGGTAGAGGGGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGCTTGACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATCTGTTATGTGACGAAGATATTGGGGGACGGAAGTCTGAAAAAGCCAAAGAGCTAGGAACTTCCTTCCTCACAGAGGATGGATTGTTTGATATGATTCGTGCCTCAAAACCTGCAAAAGCTTCTTCACAAGAAGACAAGAAACTTGTGAACAAGGCTGTTGCAGTAGCATCCCAGTCAAAAGTTTCTCCGAAATCACAAGTTAAGGTCCCTCTGTCTTCACGCTCACCTTCTAAACAAGCCAAGCCGAAAACTGCTACTACTGTTCAGTCTTCTTCGATGTGGACAGAAAAATATCGACCTAAAGATCCAAAGGATATCATAGGGAATCAGTCACTTGTTTTACAGCTTCGTAATTGGTTGAAAGCTTGGAATGAGCATTTTTTGGACACTGGTAACAAAAAGCAGGGAAAAAAGCAAAATGACTCTGGTTTGAAAAAAGCTGTCTTGTTAAGTGGAACTCCTGGTATAGGAAAAACAACTTCAGCAAAGTTGGTCTGCCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGACAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGTGGAAGCAAAACAAATTCCGTTAAGGAACTTGTAACCAACGAGGCCATTGGTGTTAATATGGAACGGTCAAAGCATTACAAATCTGTGCTTATTATGGATGAGGTTGATGGGATGTCAGCTGGTGACAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTTTCGGAAGCCTACAAAGCAACAGATGGCAAAGAGGTTGATGGATGTTTCAAAGGCTGAAAGACTTCAAGTTAACGAGATTGCACTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGAATGGCACTAAACCAGTTACAGTATATGAGCCTCTCTATGTCAGTTATCAACTATGATGATATTAGGCAGCGCTTTCTTACCAATGCAAAAGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAATCTCAGCATGAGTGATCCTGATCTTGTTCCTCTTATTATCCAGGAAAATTATATTAATTATAGACCAAGCTTGGCTGGTAAGGATGATAGTGGCATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTACAGATTCGCAGATATAGACAGTGGCAGCTCTCTCAAACTAGTTCCCTTGCTACAAGCATAATTCCTGCATCATTGTTACATGGGCAAAGGGAAATACTTGAACAGGGAGAACGAAATTTCAACCGGTTTGGTGGGTGGCTGGGAAAGAACTCAACAATGGGAAAAAACCTAAGGCTTTTGGATGATCTTCATGTTCACATTCTTGCTTCTCGTGAATCTAGTTCGGGAAGGGATACCATTCGCATGGAATACCTTACTCTTCTTCTTAAAGAAATGACAGAGCCCCTGCGAACCCTGCCTAAGGCTGAAGCAGTTCAGCAAGTTGTGGAATTGATGAATACATACTCTATCAGTCAAGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCTCATCTCGGGTTGTTCGAGTTGCAGATCTAATCACTCTTCCAGGGGTAAAAAAGGTCCCTAAGAAGCGTATTGCTGCTATTCTGGAACCAGCTGGTGAAGAAGTGGAAAAAGGTGAAGGTGACACCTTAGACGAGAGCGAAGAAGAGAACAGCTCTGATAATGAAGAGTTGGAGGGCACCAAGGGTGAGAAGCTGCAATCAGAACTTCAAAGCTATAATTCAAAGGCCACGCAAATTCAGTTGGAACTGAAGGGAACGGGAAATTCAAGTTCCAAGAAGACATCGGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGGGAAGAAGGTTGCTCAAGCTCCAAAGACTACTGCAAAAAGAAAATGGTGA 2817 0.4278 MSDIRKWFMKTHDKGNNAASSKPSSDKPQSEKTVAGGQESSGRRITSKYFNSNKQKGKDEKEKQELPAKRKNAKDSEEIHEDDGDDSVLPTNKKKLADTTPTKKLKSGSGRGIPKKSAVLEESDEDDDKDAVSAAKSAGRGGGGGGRGAPGRSTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKASSQEDKKLVNKAVAVASQSKVSPKSQVKVPLSSRSPSKQAKPKTATTVQSSSMWTEKYRPKDPKDIIGNQSLVLQLRNWLKAWNEHFLDTGNKKQGKKQNDSGLKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSKTNSVKELVTNEAIGVNMERSKHYKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVSKAERLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLIIQENYINYRPSLAGKDDSGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSLATSIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNLRLLDDLHVHILASRESSSGRDTIRMEYLTLLLKEMTEPLRTLPKAEAVQQVVELMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEQSSSRVVRVADLITLPGVKKVPKKRIAAILEPAGEEVEKGEGDTLDESEEENSSDNEELEGTKGEKLQSELQSYNSKATQIQLELKGTGNSSSKKTSGGRGKGASASGKKVAQAPKTTAKRKW 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02740 938 Gene3D - 512 582 - -
Gma06g02740 938 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 14 910 - -
Gma06g02740 938 MobiDBLite consensus disorder prediction 170 185 - -
Gma06g02740 938 MobiDBLite consensus disorder prediction 881 915 - -
Gma06g02740 938 SMART BRCT_7 188 266 IPR001357 -
Gma06g02740 938 CDD AAA 376 475 - -
Gma06g02740 938 Gene3D BRCT domain 163 265 IPR036420 -
Gma06g02740 938 SUPERFAMILY post-AAA+ oligomerization domain-like 583 728 IPR008921 GO:0003677|GO:0006260
Gma06g02740 938 Pfam BRCA1 C Terminus (BRCT) domain 188 263 IPR001357 -
Gma06g02740 938 PANTHER REPLICATION FACTOR C SUBUNIT 1 14 910 - -
Gma06g02740 938 Gene3D - 322 511 IPR027417 -
Gma06g02740 938 Pfam ATPase family associated with various cellular activities (AAA) 379 478 IPR003959 GO:0005524|GO:0016887
Gma06g02740 938 MobiDBLite consensus disorder prediction 847 938 - -
Gma06g02740 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 572 IPR027417 -
Gma06g02740 938 ProSiteProfiles BRCT domain profile. 186 267 IPR001357 -
Gma06g02740 938 SUPERFAMILY BRCT domain 186 267 IPR036420 -
Gma06g02740 938 MobiDBLite consensus disorder prediction 855 871 - -
Gma06g02740 938 Gene3D - 584 693 - -
Gma06g02740 938 MobiDBLite consensus disorder prediction 53 78 - -
Gma06g02740 938 SMART AAA_5 375 513 IPR003593 -
Gma06g02740 938 MobiDBLite consensus disorder prediction 14 52 - -
Gma06g02740 938 CDD HLD_clamp_RFC 512 570 - -
Gma06g02740 938 MobiDBLite consensus disorder prediction 85 101 - -
Gma06g02740 938 MobiDBLite consensus disorder prediction 1 187 - -
Gma06g02740 938 CDD BRCT_RFC1 186 264 - -
Gma06g02740 938 Pfam Replication factor RFC1 C terminal domain 652 814 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Gma06g02740 938 Coils Coil 860 899 - -
Gma06g02740 938 MobiDBLite consensus disorder prediction 290 327 - -
Gma06g02740 938 PIRSF RFC1 1 913 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02740 Gma-Chr6 51184933 51195506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02740 1 894 Core DNA Replication Machinery Family AT5G22010 66.703 0.0 1107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02740 K10754 - gmx:100802809 1666.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00855 12 8237041 8249807 Gma06g02740 06 51184933 51195506 GST