Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02730 ATGGAGTGGCATAGAGGCCACACCATAGGCCAAGGCTCATCAGCCACCGTCTCCACCGCCACATGCCGTGGCGGTGTCTTCGCCGTCAAGTCAACGGAGCTTCCACAATCAGAGCCTCTAAAAAGGGAGCAAAAAATATTGTCCTCTCTAAGTAGTCCTTATGTGGTTGCATACAAAGGGTGTGACATTACCATGGAGAACAACAAGCTCTTGTTCAACCTCTTCATGGAGTACATGCCCTTCGGCACACTTGCCCAGGCGGCAACTCGCCGGTGCGCTGGCCGACTCTTTGAGGAGTCGGTCATCGCACGCTACACGAGGCAAATCGTGCAAGGGCTGGACTATTTGCATTCAAAAGGGTTGGTGCATTGTGACATCAAGGGTGCCAACATCTTAATTGGTGAAGATGGGGCCAAAATTGGCGACTTGGGGTGTGCCAAGAGTGTGGCGGATTCCACGGCGGCGATCGGAGGCACGCCGATGTTCTTGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGTGCTAGTGACATTTGGTCACTTGGGTGCACTGTGATTGAAATGGTAACCGGTGGTGCACCATGGCCTAATGTGGAAGACCCTTTTTCAGCGCTTTACCATATTGCATATTCTAGTGAAGTGCCTGAGATTCCTTGTTTTCTGTCCAACGAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCACAAGAGAGGTGGAAGGCTAGTGAACTATTGAAGCATCCATTTATTGAGAAAACATTATGTTTCAATAAGGAAGTTTTGGAGTCTAATTCAAGTTCCCCAACAAGTGTTCTTGAACAAGGCTATTGGAGTTCTATGGAAGAGTCAAAAAGTTTAGGCAATTTGATTCACAAAACTAGAAAGTTTGAAGCTTTGGCTGCTGGGAGGGTCAGAATGTTGGCCCTGTCTTCTGGGGTGCCATGTTGGGCAAGACATGATGATGATGATGAGAATTGGATCACAGCCAGAGGGAATGGGGTTGAAGGTTTTGTTCATTGTGGGTCATGGGTTGTCTCACTAGGTGTTGGTGAAAAGCAATGTTAG 1074 0.4907 MEWHRGHTIGQGSSATVSTATCRGGVFAVKSTELPQSEPLKREQKILSSLSSPYVVAYKGCDITMENNKLLFNLFMEYMPFGTLAQAATRRCAGRLFEESVIARYTRQIVQGLDYLHSKGLVHCDIKGANILIGEDGAKIGDLGCAKSVADSTAAIGGTPMFLAPEVARGEEQGCASDIWSLGCTVIEMVTGGAPWPNVEDPFSALYHIAYSSEVPEIPCFLSNEAKDFLGKCLRRNPQERWKASELLKHPFIEKTLCFNKEVLESNSSSPTSVLEQGYWSSMEESKSLGNLIHKTRKFEALAAGRVRMLALSSGVPCWARHDDDDENWITARGNGVEGFVHCGSWVVSLGVGEKQC 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02730 357 CDD STKc_MAPKKK 2 253 - -
Gma06g02730 357 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02730 357 Pfam Protein kinase domain 4 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02730 357 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Gma06g02730 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Gma06g02730 357 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 339 - -
Gma06g02730 357 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02730 357 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Gma06g02730 357 SUPERFAMILY Protein kinase-like (PK-like) 3 280 IPR011009 -
Gma06g02730 357 PANTHER MAP KINASE KINASE KINASE 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02730 Gma-Chr6 51083845 51085170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02730 1 335 MAP Kinase Kinase Kinase AT1G05100 50.286 3.19e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma06g02730 Pkinase 3.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02730 K20716 - gmx:100794648 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02730 06 51083845 51085170 Gma06g02730 06 51083845 51085170 ECH
Gma06g02730 06 51083845 51085170 Gma07g02527 07 47604855 47606538 ECH
Gma12g00868 12 8459903 8460961 Gma06g02730 06 51083845 51085170 GST
Gma13g02742 13 42031848 42033044 Gma06g02730 06 51083845 51085170 PCT
Gma12g01821 12 38826081 38827295 Gma06g02730 06 51083845 51085170 PCT
Gma06g02730 06 51083845 51085170 Gma13g02742 13 42031848 42033044 PCT
Gma06g02730 06 51083845 51085170 Gma12g01821 12 38826081 38827295 PCT