Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02708 ATGTTCCAGCCGAACCTGATGGACGCGTTGGAGATGGGTCAGAACACTCCCGAGAGTGAGATTCCTCGAATCCGTGAGGATGAGTTCGACAGTGCCACCAAGTCCGGTAGTGAAAACCATGAAGGTGCCTCCGGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAACGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCTTTTTTCAAGGAGTGTCCGCACCCAGATGATAAGCAAAGGAAGGAACTGAGCAGGGAATTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGTACTCAGATGAAGACACAACACGAGCGGCACGAGAATACAAATCTTAGAACCGAAAACGAGAAGCTTCGAGCAGATAACATGAGGTATAGGGAGGCACTTAGCAATGCTTCGTGTCCCAATTGTGGTGGACCAACTGCTATAGGAGAAATGTCATTCGATGAACATCACTTGAGACTTGAAAACGCAAGGCTAAGAGAAGAGATTGATCGGATTTCAGCAATTGCTGCAAAGTATGTAGGGAAGCCTGTGGTGAATTATTCAAATATTTCTCCTTCTCTCCCTCCTCGTCCATTAGAAATTGGTGTTGGTGGTGCTGGTTTTGGAGGCCAACCAGGGATTGGTGTGGACATGTATGGAGCTGGGGATCTTCTTAGGTCAATCAGTGGACCCACTGAAGCTGATAAGCCAATAATCATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTTATTGGAATGGCACAAATGGGTGAGCCTCTTTGGTTAACTACACTTGATGGCACATCCACTATGCTCAATGAGGATGAGTACATTAGGTCTTTTCCTCGAGGTATTGGTCCAAAACCTAGTGGCTTCAAATGTGAAGCTTCAAGAGAAACTGCTGTTGTTATCATGAACCATGTCAACCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTCTCTGGTATAGTCTCAAGAGCCATGACTCTAGAAGTGTTATCAACAGGGGTTGCCGGGAACTACAATGGTGCCTTACAAGTGATGACAGCAGAACTACAACTACCTACACCACTTGTGCCAACTCGTGAGAGTTATTTTGTAAGGTATTGTAAGCAACATGGAGATGGGACTTGGGCTGTTGTGGATGTTTCTTTGGATAATTTGCGCCCAAGTCCTTCAGCCAGATGTAGAAGAAGGCCTTCTGGCTGCCTAATTCAAGAAATGCCAAATGGCTATTCAAAGGTCACATGGGTTGAGCATGTGGAAGTGGATGATAGAGGTGTTCACAATCTTTACAAGCAGCTTGTTAGCTCCGGACATGCATTTGGTGCAAAACGTTTGGTAGCAACCTTAGATCGACAATGTGAAAGACTCGCTAGTGCCATGGCAACAAACATTCCCACTGTAGATGTTGGTGTGATAACAAACCAAGAAGGGAGAAAAAGCATGATGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCTCACACATGGACAACACTCTCAGGGACAGGTGCTGATGATGTAAGGGTTATGACTCGAAAGAGTGTGGATGACCCTGGAAGACCCCCTGGCATTGTTCTCAGTGCTGCCACTTCTTTTTGGCTTCCTGTTCCTCCTAAACGAGTCTTTGACTTCCTCCGTGACGAAAACTCTAGGAATGAGTGGGATATTCTTTCCAATGGTGGAGTTGTCCAAGAAATGGCACACATTGCAAACGGAAGAGACACTGGAAACTGTGTATCTCTACTACGAGTAAATAGTGCAAATTCAAGCCAGAGCAACATGTTGATATTACAAGAGAGTTGCACCGATTCAACAGGCTCTTTTGTAATTTATGCTCCAGTGGACATTGTTGCGATGAATGTGGTTCTAAACGGTGGAGACCCAGATTATGTTGCACTTCTTCCTTCAGGGTTTGCTATTCTCCCAGATGGAACCACATCGCATGGAAGTGGTGGTGGCGTCATTGGCGAAACTAGCCCTAGTAGTGGATCTCTCTTAACTGTTGCCTTTCAAATATTGGTCGATTCTGTTCCAACCGCTAAGCTTTCTCTTGGATCTGCTTTTGGATTCTGCGTTTACAAGAAGGATCAAAGGGACACATTGTATGGTGGAAAATCAAAAGGTGGCGAGGAACCTCGGCTTATATTACAAAGACGGGGAGAAGTCAAGAGCGCACCTTGCATGATTCCTTCTCAGTACTCCAAAAGAGTTATGAGAGGATTAAGGTTCGGGAATTGA 2295 0.4566 MFQPNLMDALEMGQNTPESEIPRIREDEFDSATKSGSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTNLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLEIGVGGAGFGGQPGIGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTSTMLNEDEYIRSFPRGIGPKPSGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRLVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTSHGSGGGVIGETSPSSGSLLTVAFQILVDSVPTAKLSLGSAFGFCVYKKDQRDTLYGGKSKGGEEPRLILQRRGEVKSAPCMIPSQYSKRVMRGLRFGN 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02708 764 ProSiteProfiles START domain profile. 237 469 IPR002913 GO:0008289
Gma06g02708 764 SMART HOX_1 53 116 IPR001356 GO:0003677
Gma06g02708 764 MobiDBLite consensus disorder prediction 20 53 - -
Gma06g02708 764 Gene3D - 41 129 - -
Gma06g02708 764 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 10 706 - -
Gma06g02708 764 Coils Coil 106 138 - -
Gma06g02708 764 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Gma06g02708 764 SMART START_1 246 466 IPR002913 GO:0008289
Gma06g02708 764 CDD homeodomain 55 113 IPR001356 GO:0003677
Gma06g02708 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 10 706 IPR042160 -
Gma06g02708 764 SUPERFAMILY Bet v1-like 485 710 - -
Gma06g02708 764 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Gma06g02708 764 CDD START_ArGLABRA2_like 241 465 - -
Gma06g02708 764 MobiDBLite consensus disorder prediction 1 63 - -
Gma06g02708 764 Pfam START domain 247 466 IPR002913 GO:0008289
Gma06g02708 764 SUPERFAMILY Bet v1-like 237 468 - -
Gma06g02708 764 SUPERFAMILY Homeodomain-like 44 112 IPR009057 -
Gma06g02708 764 Gene3D - 293 466 IPR023393 -
Gma06g02708 764 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02708 Gma-Chr6 50761129 50767519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02708 1 705 Homeobox Transcription Factor Family AT1G05230 77.330 0.0 1132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma06g02708 START 4e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02708 K09338 - gmx:100790101 1398.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02708 06 50761129 50767519 Gma06g02708 06 50761129 50767519 ECH
Gma12g00894 12 8841636 8848161 Gma06g02708 06 50761129 50767519 GST
Gma13g02729 13 41875663 41881371 Gma06g02708 06 50761129 50767519 PCT
Gma12g01835 12 39021822 39029036 Gma06g02708 06 50761129 50767519 PCT
Gma06g02708 06 50761129 50767519 Gma13g02729 13 41875663 41881371 PCT
Gma06g02708 06 50761129 50767519 Gma12g01835 12 39021822 39029036 PCT