Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02677 ATGATGGTGAGAACCCCGAGCTGTGACAAAAATGGAGTGAAGAAAGGAACATGGACACCAGAGGAAGACAAGAAGTTGGTTGAGTACATTACCAGATATGGCCACTGGAATTGGCGATTACTCCCCAAGTTCGCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACTAAGGTGGCTGAATTACTTAAGGCCAAACCTCAAAAGAGGGAACTACACCAAGGAAGAGGAGGAAACTATTATCAAGCTGCACAGACATCTGGGTAACAGATGGTCTGCCATAGCTGCACGGATGCCAGGAAGAACAGACAACGAAATTAAGAACCACTGGCACACCAACCTCAAGAAGAGGTCTCAACAAGACTCAGTAGCCACAGAATCTATAGTCTCAAACTCAAATGACCAATCTCCAACTGAACAACCAACTGCAAATACTACTTTCCAAAGCTTTAACAGTACCACTCAAGATTGTTCCCCACTTTCCCAGCATTCATCACCATCCACAAGCACAGTGGTCAGCACCGAAAATCTAGTGCTGATGGAAGATGAATTTGCCTTTTGGGATTCAGACACAGATCTTATGAGTGGGAATTTCTGGCTAGAACCGTATATGCTTGATATTTCCTACGTTCCTGCTAGTGAACCTGAGTACTCTAGCCAAGTGTTTGATGTAGAACTTTGGAGCCATGATACTTAA 693 0.4444 MMVRTPSCDKNGVKKGTWTPEEDKKLVEYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGNYTKEEEETIIKLHRHLGNRWSAIAARMPGRTDNEIKNHWHTNLKKRSQQDSVATESIVSNSNDQSPTEQPTANTTFQSFNSTTQDCSPLSQHSSPSTSTVVSTENLVLMEDEFAFWDSDTDLMSGNFWLEPYMLDISYVPASEPEYSSQVFDVELWSHDT 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02677 230 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gma06g02677 230 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gma06g02677 230 SMART sant 67 115 IPR001005 -
Gma06g02677 230 SMART sant 14 64 IPR001005 -
Gma06g02677 230 Gene3D - 14 67 - -
Gma06g02677 230 MobiDBLite consensus disorder prediction 116 167 - -
Gma06g02677 230 MobiDBLite consensus disorder prediction 110 167 - -
Gma06g02677 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma06g02677 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Gma06g02677 230 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 2 208 - -
Gma06g02677 230 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 208 - -
Gma06g02677 230 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma06g02677 230 CDD SANT 70 113 IPR001005 -
Gma06g02677 230 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gma06g02677 230 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Gma06g02677 230 CDD SANT 17 62 IPR001005 -
Gma06g02677 230 Gene3D - 70 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02677 Gma-Chr6 50396257 50398354 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02677 2 207 MYB Transcription Factor Family AT2G31180 49.515 3.94e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma06g02677 Myb_DNA-binding 6.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02677 K09422 - gmx:100777621 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02677 06 50396257 50398354 Gma06g02677 06 50396257 50398354 ECH
Gma12g00935 12 9620869 9623223 Gma06g02677 06 50396257 50398354 GST
Gma06g02677 06 50396257 50398354 Gma13g02682 13 41495325 41504690 PCT
Gma06g02677 06 50396257 50398354 Gma12g01877 12 39434174 39436588 PCT