Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02622 ATGGGTTGCATATGTTCTAAGAGTTCAGCTATAGAGGACAGCAAGGAAAGTGTCACTAAGAAATTTCAATCGTATAGCACACGGCCTTCAGAGTTGAATGTTTTACGGTTGAATTCAACTAGGAGGGTTGATGAGGGTGGGGTGAAAGATGTGTTAATAGATGGTGGTCATGTGAAGGGTTCATTGATTGAAAGGAAGGCCAATGGTTCAGGGCAGTTGTATGGTGATCATCATGATGTGAAGAAGAAATTAGAGAAGCCGGGATTGACTGTCGTGGATCATATCGGCCCTGGAAGGGTTCCAAAGGCTATAGAAGGAGAGCAAGTTGCGGCAGGATGGCCGGCATGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCACGTAGTGCAAATACTTTTGAGAGGTTACATAAAATTGGGCAAGGAACTTACAGTACTGTATATAAGGCACGGGATGTGATTAACCAAAAGTTTGTAGCATTGAAGAAAGTACGCTTTGACAATCTGGATCCCGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACATAATTAAATTGGAGGGCTTGATTACATCACGAATGTCTCGCAGCCTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACGGGACTTGCATCAAATCCTGATATTAAGTTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGCCATAGTCATGGTGTCCTCCATCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAGTTTTAAAGATTGCTGATTTTGGTTTGGCAAGTTCTTATGACCCTCACCACAATGTTCCATTGACAAGCCGAGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTTGGAGCCAATCATTATGGGGTTGCAGTGGATTTATGGAGCACTGGTTGCATACTGGGGGAACTATATACTGGAAGGCCAATTTTGCCTGGAAAAACGGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGTGGCTCACCATCTGATGACTATTGGCTTAAATTGCGGTTGTCACATTCAACAGTATTCAGGCCGCCACACCATTATAGGAAATGTGTTGCAGATACATTTAAGGACTACCCATCTACCGCGGTAAAGCTTATAGAGACCCTACTTTCTGTAGAGCCAGCACATCGAGGGTCTGCAGCAGCTGCTCTGAAAAGTGAGTTCTTTACGTCAGAGCCTCTGCCTTGTGATCCATCAAGTTTACCAAAATATGCTCCCAGCAAGGAGATTGATGCTAAATTACGGGATGAAGCCAGAAGGCAAAGAGCTGTTGGAGGTAGGGAACAAAAAGTTGCCTCAGGAGTTGGACAGGAAAAAGGGCATAGAGCAAATGTTGCAACAAAAGACAATGCTGACCCAGGCTTATTGGTGCAGCAAGGACGTTATTCCAGCTCAAGGAACCAAAGTGAATTATCCAACCCTCATAGAGGAACGGTGTCTGGAATTCTGGTTTTCCCTCACAAACAGTCAGAAAAAGAAATGGATAATAATTTCTCTGGGCATATCTATAAGAGGCCTTCACATTCCGGCCCATTGGTTCCTGGTTCTGTCTGGGCAAAAGGCAGGAAGGAAGTTGATGATGTACCTCCTGTTTCAAACAGAGTGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGGACTTTGCCTGAAGATCAGGAGGTTAAACCGGTTCACTTGCACCACAGAAAACCAATTGAAGTAAGAAAATCTGTGGAGTCAACTAATGGATCAGAGTCAAGAAGAAGGCAGGATCAAAAACGGATTGTTGATCTCAATCAAATTGAAAGTAGAAGGGTCGCGGCTGAAAAATCAACTCCGGGCGGGCGCGAGTCCATGGGAAACAAGATATACCTCTCAGGTCCATTAATGGTTTCGTCAAGCAACATGGATCAGATGCTCAAAGATCATGACAGAAAGATCCAAGAGTTTTCAAGACGAGCGAGAATCGACAAGTCAAGAGCAAGAGGTGAGAAAGTTCGTGCTCTGCGGAAGTAG 2091 0.439 MGCICSKSSAIEDSKESVTKKFQSYSTRPSELNVLRLNSTRRVDEGGVKDVLIDGGHVKGSLIERKANGSGQLYGDHHDVKKKLEKPGLTVVDHIGPGRVPKAIEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVINQKFVALKKVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLEGLITSRMSRSLYLVFEYMEHDLTGLASNPDIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASSYDPHHNVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDDYWLKLRLSHSTVFRPPHHYRKCVADTFKDYPSTAVKLIETLLSVEPAHRGSAAAALKSEFFTSEPLPCDPSSLPKYAPSKEIDAKLRDEARRQRAVGGREQKVASGVGQEKGHRANVATKDNADPGLLVQQGRYSSSRNQSELSNPHRGTVSGILVFPHKQSEKEMDNNFSGHIYKRPSHSGPLVPGSVWAKGRKEVDDVPPVSNRVNLSKLSGLVASRTLPEDQEVKPVHLHHRKPIEVRKSVESTNGSESRRRQDQKRIVDLNQIESRRVAAEKSTPGGRESMGNKIYLSGPLMVSSSNMDQMLKDHDRKIQEFSRRARIDKSRARGEKVRALRK 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02622 696 MobiDBLite consensus disorder prediction 448 485 - -
Gma06g02622 696 CDD STKc_CDK9_like 136 420 - -
Gma06g02622 696 Gene3D Transferase(Phosphotransferase) domain 1 219 459 - -
Gma06g02622 696 Pfam Protein kinase domain 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02622 696 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02622 696 SMART serkin_6 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02622 696 MobiDBLite consensus disorder prediction 675 696 - -
Gma06g02622 696 SUPERFAMILY Protein kinase-like (PK-like) 129 428 IPR011009 -
Gma06g02622 696 PANTHER CELL DIVISION PROTEIN KINASE 1 683 - -
Gma06g02622 696 MobiDBLite consensus disorder prediction 675 689 - -
Gma06g02622 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Gma06g02622 696 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Gma06g02622 696 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Gma06g02622 696 PANTHER CYCLIN-DEPENDENT KINASE 1 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02622 Gma-Chr6 49558005 49563793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02622 128 462 Core Cell Cycle Gene Families AT5G10270 48.433 1.13e-111 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma06g02622 Pkinase 6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02622 - - gmx:100807590 1402.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01016 12 11393921 11400064 Gma06g02622 06 49558005 49563793 GST
Gma13g02625 13 41028215 41033580 Gma06g02622 06 49558005 49563793 PCT
Gma12g01936 12 39984001 39990772 Gma06g02622 06 49558005 49563793 PCT
Gma06g02622 06 49558005 49563793 Gma13g02625 13 41028215 41033580 PCT
Gma06g02622 06 49558005 49563793 Gma12g01936 12 39984001 39990772 PCT