Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02612 ATGAGTTTGGTGGTTAACAAGAATTGCAGTTCTGAAAACGAAGGTTTTGTTTTGTCATTAAAATTCAAAACTTTGCGCCTTATCAGCAACAACAGAATCCATGTCACTGCGGTTCCTGCATCTATAAACTGTAAACTGCTTGAGTATCAAAGAGAGGGAGTGAGGTTTTTGTATGGTTTGTACAAGAACAATCATGGAGGCACACTTGGAGATGACATGGTTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCCGTCTTTGGTAAAGAAGGACAATCTACTCTAAATGAGAACCGTGTAGAGAAAAGAGATCATGCATTAATAATTTGCCCAACTTCTGTTATCCACAATTGGGAGAGCGAATTCTCCAAGTGGTCTAGCTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGACCTGATATATGATAAATTGGAAGCAAATGAAGTGGAGTTACTCATTACCAGTTTTGACACATACAGGATTCATGGAAGTTCCTTGTTAGATATCAACTGGAACATTGTTATTATCGATGAGGCTCATCAACTTACGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTAAGACGCTATGGTCTCACTGGGACTGCAATGCAAAATAAGATCATGGAATTGTTCAATCTCTTTGATTGGGTTGCACCTGGGTCCCTTGGAACACGGGAACACTTTCGTGAGTTCTATGATGAACCCCTTAAGCATGGCCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGGCAGTTCTTCAGAAATATCTGTTGAGAAGGACAAAGGAATAG 849 0.3946 MSLVVNKNCSSENEGFVLSLKFKTLRLISNNRIHVTAVPASINCKLLEYQREGVRFLYGLYKNNHGGTLGDDMVLGKTIQAIAFLAAVFGKEGQSTLNENRVEKRDHALIICPTSVIHNWESEFSKWSSFSVSIYHGANRDLIYDKLEANEVELLITSFDTYRIHGSSLLDINWNIVIIDEAHQLTNEKSKLYKACLEIKTLRRYGLTGTAMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVAVLQKYLLRRTKE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02612 282 Pfam SNF2-related domain 62 281 IPR000330 GO:0005524|GO:0140658
Gma06g02612 282 SMART ultradead3 42 237 IPR014001 -
Gma06g02612 282 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 229 IPR014001 -
Gma06g02612 282 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 26 281 - -
Gma06g02612 282 PANTHER SNF2/RAD54 FAMILY MEMBER 26 281 - -
Gma06g02612 282 Gene3D - 19 278 IPR038718 -
Gma06g02612 282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 279 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02612 Gma-Chr6 49423997 49427778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02612 39 282 RAD5 or RAD16-like Gene Family AT3G16600 28.269 7.71e-23 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma06g02612 SNF2_N 1.9e-44 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02612 K20098 - gmx:100781003 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02612 06 49423997 49427778 Gma06g02612 06 49423997 49427778 ECH
Gma12g01039 12 11740922 11747431 Gma06g02612 06 49423997 49427778 GST