Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02607 ATGGCTGCTCAGAAGCGTTCCTTCCCTGATGCTCCTAACGATAACAACCGCCACGCCAAACATCACCACgaagaagcaaaaactgaagaagaagaagaagaagaagaagaagaagcacaacaacaacaacagcatgatgaagaagaagaagaagaggataataattacaaatcagacgattctcctccCGAAGACAAATCCGAATATGTGTTTGTAGAACTTCTGGAAATACGCAAAGAAGTCCAATGTCCAATTTGCCTAGGTATTATTAAGAAAACACGTACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCGATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGAACACACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCCTTAATTGCAGCTTTATATCCTAATATTGAGAAGTATGAACAAGAGGAGCTTGAATTTCGTGAAGAGGACAAGAACCGCAATAAGCAGATTCAGGCTTCAATTGCAAAAGTTGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTTCATTTGTGACAAGATCACAGCGCAATCAACGAAATGTTCTCTCTAGGAGACAAAACCAAGGGATGGATAATCAAGGATCTGAAGATAATGAGGAGGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAACTCAGGCAGAGAAGGCGAAAGAGGCGGACCAGAGGTCGTCCTTCTCAGCCCTCATCATCGACGGCAAGTCCTGATGGTGGATGCATAGAAAGTGACATGGACATAAGAATTTCTTCTAGACTGGTGTCAAAACCTCAAAAACTAACTTGGGGAAGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAATGGTAGCAATAGCAAAAGTTCCCGCAGTAGTCGCTTGGCTAAGTTAGTTGATTATCTCCATAGCTTGAATGAAAACACTGATGAGTTAGATGTCCATCTCATTCTTTTGTCTTTAGACAAACAAATTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGGCCAACATTGTCTGTGAAGCATCTTTGTGAATATGTTGCTCATCAGACACCTTTGCTGGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAGTACAGTTTGTGACAAGTCATTTGATGAGACTTCATCCTCTGATGAGCTAACTACGCTGGTTATAGATCCTAGCAAAGATGAACTGGAAACTCTGCAAGGGCATGAATCTCTGGCAGGGATTAAATCTAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGAGGAAGGAATGA 1368 0.3955 MAAQKRSFPDAPNDNNRHAKHHHEEAKTEEEEEEEEEEAQQQQQHDEEEEEEDNNYKSDDSPPEDKSEYVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPNIEKYEQEELEFREEDKNRNKQIQASIAKVVQRQSEALVKRRRDTPGSFVTRSQRNQRNVLSRRQNQGMDNQGSEDNEEENDNNEKDSSSTDERCTELRQRRRKRRTRGRPSQPSSSTASPDGGCIESDMDIRISSRLVSKPQKLTWGRGGFRSHTRHGSGNGSNSKSSRSSRLAKLVDYLHSLNENTDELDVHLILLSLDKQITPSLQQPHLCCRPTLSVKHLCEYVAHQTPLLVEEVEILAVKGCCSTVCDKSFDETSSSDELTTLVIDPSKDELETLQGHESLAGIKSKCISKREHLILAYRRKE 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02607 455 MobiDBLite consensus disorder prediction 196 219 - -
Gma06g02607 455 SMART ring_2 83 122 IPR001841 -
Gma06g02607 455 MobiDBLite consensus disorder prediction 29 58 - -
Gma06g02607 455 ProSitePatterns Zinc finger RING-type signature. 99 108 IPR017907 -
Gma06g02607 455 SUPERFAMILY RING/U-box 71 137 - -
Gma06g02607 455 MobiDBLite consensus disorder prediction 1 65 - -
Gma06g02607 455 CDD RING-HC_RING1_like 83 123 - -
Gma06g02607 455 Coils Coil 16 54 - -
Gma06g02607 455 MobiDBLite consensus disorder prediction 304 318 - -
Gma06g02607 455 Pfam Zinc finger, C3HC4 type (RING finger) 82 122 - -
Gma06g02607 455 MobiDBLite consensus disorder prediction 178 275 - -
Gma06g02607 455 PANTHER OS11G0578200 PROTEIN 13 455 IPR044592 -
Gma06g02607 455 ProSiteProfiles Zinc finger RING-type profile. 83 123 IPR001841 -
Gma06g02607 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 146 IPR013083 -
Gma06g02607 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 13 455 - -
Gma06g02607 455 MobiDBLite consensus disorder prediction 292 318 - -
Gma06g02607 455 MobiDBLite consensus disorder prediction 11 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02607 Gma-Chr6 49384022 49390857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02607 76 146 C3H Transcription Factor Family AT3G23060 35.135 6.93e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02607 K10695 - gmx:100801738 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02607 06 49384022 49390857 Gma06g02607 06 49384022 49390857 ECH