Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02604 ATGAGTAGTGTTTTTTCAGAACACAAaTTCCAACTTCAACCCTCCCACCAACTTCTCTCCCtCAAGAAATCCCTCGGAGACATTGACATCCCAGTCCCACCAAGGAAGCTCCTCACCCGCCGCTCCGCCGCCGTCCACGACGGCTCCGGCGACATTTATCTGCCTCACAGTGGCTCCACTGACTCCTCCACCGACGATGACTCCGATGGCGACCCCTATGCCTCCGACCAATTCCGCATGTTCGAGTTCAAGGTCCGACGATGTAGTCGCAGCCGGAGCCATGATTGGACAGACTGTCCCTTTGTGCATCCCGGTGAGAAGGCCCGTCGTCGGGACCCTCGCCGGTTTTATTACTCTGGAACAGTCTGTCCAGAGTTTCGCCGCGGTCAGTGTGACCGCGGCGATGCATGTGAGTTTTCACATGGGGTGTTTGAGTGCTGGCTGCACCCTTCTAGGTATAGGACCGAGGCTTGCAAGGATGGCAAGAATTGCAAGCGAAAAGTTTGCTTCTTTGCTCACACCCCTCGCCAACTCAGGGTTTTTCATTCCAATGACAATAGTAACAAGAAAAAGTGCACCGATATAAGCCCTCATAATAACAACAATTGTTGTTTGGTTTGTCATTGCTCTAATTCTACTCGTTCACCAACTTCTACCTTGTTTGGCATGTCTCATTTTTCTCCTCCATTATCACCACCTTCTCCTTCTTCGCCTTCTATGTTTGAGACCAACAACCATCATCATGGTGTTGTGAAATATAATAAGGATGTTTTCTCTGAGCTTGTGTGTTCCATGGAGGGTTTGAATTTTGATGAGGCTTCTTCACTGTTGTCTGCTGCTTCTAAGCCTCATCATCACAACAATTTGTCTTCTTGGCTTGATGTTTCTAAGGATCACAATCAAAAACAGTTCAATACTCTTAATTCGCCAACCATCACTGCTTGTGGAAGTTTTTCCAATAATGGAAATGGGGGATTTTTGAGAGCAGAAAATGGGGTTGTTGTTGATGATGTCATTGCCCCAGATCTCGCATGGGTGAATGAATTGCTGATGTAG 1056 0.4773 MSSVFSEHKFQLQPSHQLLSLKKSLGDIDIPVPPRKLLTRRSAAVHDGSGDIYLPHSGSTDSSTDDDSDGDPYASDQFRMFEFKVRRCSRSRSHDWTDCPFVHPGEKARRRDPRRFYYSGTVCPEFRRGQCDRGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVFHSNDNSNKKKCTDISPHNNNNCCLVCHCSNSTRSPTSTLFGMSHFSPPLSPPSPSSPSMFETNNHHHGVVKYNKDVFSELVCSMEGLNFDEASSLLSAASKPHHHNNLSSWLDVSKDHNQKQFNTLNSPTITACGSFSNNGNGGFLRAENGVVVDDVIAPDLAWVNELLM 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02604 351 MobiDBLite consensus disorder prediction 48 74 - -
Gma06g02604 351 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 46 350 - -
Gma06g02604 351 PANTHER UNKEMPT FAMILY MEMBER 46 350 IPR045234 -
Gma06g02604 351 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Gma06g02604 351 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Gma06g02604 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Gma06g02604 351 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Gma06g02604 351 Gene3D - 117 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02604 Gma-Chr6 49352486 49353541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02604 73 232 C2H2 Transcription Factor Family AT5G12850 48.750 1.31e-51 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma06g02604 zf-CCCH 5.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02604 K23047 - gmx:100800123 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02604 06 49352486 49353541 Gma06g02604 06 49352486 49353541 ECH