Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02603 ATGGTCAAGGAGAAGAAGAACGTGGTGGTCAAGAACAAGAAGCCAAACAACAATGCCGACGAGCTTCACTTCCGCGGCGTCCGGAAGCGACCATGGGGCCGCTACGCCGCCGAGATCCGTGACCCCGGCAAGAAGACCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGACGCCGCCCGCGCCTATGACGCCGCCGCCCGCAACTTCCGCGGCCCCAAAGCCAAAACCAACTTCCCCGTGCCCCCCGACGACAACAACAACAACAACGTTAACGTGAACAAAAACAAGAGTGTTAACGTTAAATCTCACAGTCCCAGCCAGAGCAGCACCGTGGAGTCCGCCACCCCGGAGCGTGAAGCCACGCGCCGCTCCACCTCCGCCGCAATCGACCGTTTCCCGTTCCTACCCATCCAGCAGCAAATCCTCATGACCCACCCCGTCGCAGCACCCATGCGCCCGGTTTTCTTTCTCGACCGGGCCCACTTCATGACCCAGTCTTTCCCGCTCCGGTTCGAACCCGGTCCGGTCCAGAGCGACTCCGACTCCTCCTCCGTCGTCGTCGATTGTCAGCCCAAAAGAGAGCTCAATCTCGATCTTAACTTGGCTCCGCCTAATGAATATTAA 627 0.6029 MVKEKKNVVVKNKKPNNNADELHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEDAARAYDAAARNFRGPKAKTNFPVPPDDNNNNNVNVNKNKSVNVKSHSPSQSSTVESATPEREATRRSTSAAIDRFPFLPIQQQILMTHPVAAPMRPVFFLDRAHFMTQSFPLRFEPGPVQSDSDSSSVVVDCQPKRELNLDLNLAPPNEY 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02603 208 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Gma06g02603 208 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Gma06g02603 208 MobiDBLite consensus disorder prediction 72 126 - -
Gma06g02603 208 MobiDBLite consensus disorder prediction 81 116 - -
Gma06g02603 208 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Gma06g02603 208 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 130 - -
Gma06g02603 208 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Gma06g02603 208 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Gma06g02603 208 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Gma06g02603 208 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 130 - -
Gma06g02603 208 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Gma06g02603 208 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02603 Gma-Chr6 49332950 49333923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02603 21 205 AP2-EREBP Transcription Factor Family AT5G44210 49.479 1.09e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma06g02603 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02603 K09286 - gmx:100801924 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02603 06 49332950 49333923 Gma06g02159 06 38835139 38835813 ECH
Gma06g02603 06 49332950 49333923 Gma13g02430 13 39046212 39047198 ECH
Gma06g02603 06 49332950 49333923 Gma06g02603 06 49332950 49333923 ECH
Gma06g02603 06 49332950 49333923 Gma15g00730 15 6014684 6015615 ECH