Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02596 ATGCTTGCGGTGTCACCTTTGAGGAGCAATATCAAAGATGAAAAGAAGCAAGGAGAGATGGAGGGTAATTTCTCAATGGCAACAACAACAACCGATGATGTTGTCTTTGGTGACCTTTCTGAAGGGAACTTGTTGGAGAGCATCAACTTCGACGAACTCTTCGTCGGCATCGACATCCACGGAGATGTCTTGCCGGACTTGGAGATGTTCGGCGAGTTCTCCGTGGATGTCAGCACCGGCGAGGAATCGTCGGAGATGAACTCGTCGGCTAAAAGCAGCAAACTTGAGAACGATCAGAATGTCATCGCCACTACTTCAAAGAAAGAAGAGGAAGAAGATAAAACTTCTTGCAATGCTTCTGGTCAAGACTTGGGGTCAAACCGTGGAGAGGAGATTGTGAGCGAGAGAGATGAATCCGTGGTGGTGAATCCAGCACCAAAGGATGGTGGAAAAGGAAGAAAATCTTCTTCGGCTCAATCAAAGAATAATAGTAGTAGTAATAATAATCCTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACCCCAGAATTGCACAGACGATTCGTGCAAGCTGTGGAACAGCTAGGAGTGGATAAGGCGGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATTGCTAGCCACCTTCAAAAATATAGATCCCATAGGAAACATTTGCTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTGTGCTGGTGGAGGGAAGAGAGAAGGGAGTCCATGGTTAGCACCAACCATGGGTTTCCCTCCAATGACTCCCCCAATGCACCATTTTAGACCTTTACATGTATGGGGGCACCCTTCCATGGACCAGTCCTTCATGCATATGTGGCCTAAGCATCTTCCAAATTCACCACCACTCTCATGGCCGCCGCCGGCTGCACCGCCTCAAGAGCCTTCATTTTGGCACCAACTGGTTCCTAACGCACTAATCCCAGGAACAGCTTGTTTTCCACAACTTCTGACACCAACGAGATTTGGAAGTCCCCCTGTGCCCGGCATCCCACCCCATGCCATGTACAAAGCAGATCACGACATTGGCCTCCCTGGTCCCCTTTTCGACTTTTATCCGTCAAAGGAGTGCATAGATGCAGCTATTGGAGATGTTTTATCAAAGCCTTGGCTGCCTCTACCTATTGGACTTAAGGCTCCAGCGCTTGATAGTGTGATGAGTGAATTACAAAGACAAGGAATTCCAAACATTCCACCCTCTAGTGCTTGA 1281 0.4793 MLAVSPLRSNIKDEKKQGEMEGNFSMATTTTDDVVFGDLSEGNLLESINFDELFVGIDIHGDVLPDLEMFGEFSVDVSTGEESSEMNSSAKSSKLENDQNVIATTSKKEEEEDKTSCNASGQDLGSNRGEEIVSERDESVVVNPAPKDGGKGRKSSSAQSKNNSSSNNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLCAGGGKREGSPWLAPTMGFPPMTPPMHHFRPLHVWGHPSMDQSFMHMWPKHLPNSPPLSWPPPAAPPQEPSFWHQLVPNALIPGTACFPQLLTPTRFGSPPVPGIPPHAMYKADHDIGLPGPLFDFYPSKECIDAAIGDVLSKPWLPLPIGLKAPALDSVMSELQRQGIPNIPPSSA 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02596 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 231 IPR017930 -
Gma06g02596 426 MobiDBLite consensus disorder prediction 103 117 - -
Gma06g02596 426 Pfam Myb-like DNA-binding domain 178 227 IPR001005 -
Gma06g02596 426 MobiDBLite consensus disorder prediction 1 20 - -
Gma06g02596 426 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 426 IPR044825 GO:0003700|GO:0045893
Gma06g02596 426 Gene3D - 172 233 - -
Gma06g02596 426 MobiDBLite consensus disorder prediction 78 102 - -
Gma06g02596 426 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 426 - -
Gma06g02596 426 MobiDBLite consensus disorder prediction 153 174 - -
Gma06g02596 426 MobiDBLite consensus disorder prediction 78 177 - -
Gma06g02596 426 SUPERFAMILY Homeodomain-like 173 232 IPR009057 -
Gma06g02596 426 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 175 229 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02596 Gma-Chr6 49250940 49256208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02596 1 357 G2-like Transcription Factor Family AT5G44190 41.192 2.69e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma06g02596 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02596 - - gmx:100799248 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02596 06 49250940 49256208 Gma06g02596 06 49250940 49256208 ECH
Gma06g02596 06 49250940 49256208 Gma13g02605 13 40873966 40878207 PCT
Gma06g02596 06 49250940 49256208 Gma12g01950 12 40117481 40121961 PCT