Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02580 ATGGATGAAGGAGAAATCATCACACATACTGCTTTCCCTCAGAACCTAACTGCTTCTGCTGCATCTAATGATCATAACAAACCTCCTTCTGCTTTGAGGAGGAAAAGAAACCTCCCAGGAAACCCAGATCCTGAAGCAGAAGTCATAGCCTTATCACCAAAGACCCTGATGGCTACGAACAGATTCTTGTGTGAAACTTGTGGGAAGGGTTTCCAAAGGGATCAAAATCTCCAACTCCATCGACGTGGACACAACCTTCCATGGAAGCTTAAACAGAGAACGGGTAAAGAAGCAAGAAAAAGGGTTTATGTGTGTCCTGAGAAGAGTTGTGTCCACCACGACCCTTCAAGGGCTCTTGGAGACTTAACTGGGATTAAAAAGCACTTCTGCAGAAAGCACGGTGAAAAGAAGTGGAAGTGCGAGAAGTGCTCGAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAGACCTGTGGCACTAGAGAATATAAATGTGATTGTGGAACTATCTTTTCAAGGAGAGACAGCTTCATCACACACAGGGCCTTCTGTGATGCATTGGCAGAAGAAACGGCTAGGGTAAATGCAGCCTCAGACATAAACACATCCTTAGGGGGCAACAACATTGGTTACAACATAATGGGAACATCCCTAGGCCCTAATATGGCATCCCATTTCCCTTCAATTTTCAAGCCAGTTTCAAGCACTGATGAAACAAGTAACCAAACCTCAAGGGGACTACCCCTTTGGATGAGTCAAATAACATCTTCTCAGGCTCAAGAAAGAATAATGGTCAACACAAATTTGCGTGAGATTCATCAACTTGGTTCTGCCACAAGCTCATCATCAGGAACAATATATGATGGCAACTCAATTCTCCAATGCCCAAATCTTCCACCTTCTAATAACTATCAACTAAGTTGGGTGTTTGGAACTAAAATTTCCAATAACAGTAACAACCAAGAGTTAACAACTAGCACTACTACTTCACTTCCTCTAGGAAACACAAGTGCCATTCCTTCTTGGTATAGTTCCCAACACCAACCTCAACATCAACAAGCATGTCCATCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGAGCAACCTCAAGTGACCCTTCATGGCTTGGGAGCTTAGGTTTGAAATGTGGTAACAATAGCCAAGGTCAAGATGGTAATAATAATAAGTATAGTGGCATGTACGGATCAAGCTTGGTGCTCACAACCACTCTTGGGAGTGAAGCAGATAACTCTGGATGTGAATTGTCACAAATGCACCCTCACAAACGAAGACACGTGCTCAATGAAGAAAGTGGAGGGGGGCAAACTAGGGATTTCCTTGGTGTTGGTGTGCAAAACCATTTTCCACACTTCATCAACCAAGGGGTGGACTTGATTTGA 1425 0.4372 MDEGEIITHTAFPQNLTASAASNDHNKPPSALRRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASDINTSLGGNNIGYNIMGTSLGPNMASHFPSIFKPVSSTDETSNQTSRGLPLWMSQITSSQAQERIMVNTNLREIHQLGSATSSSSGTIYDGNSILQCPNLPPSNNYQLSWVFGTKISNNSNNQELTTSTTTSLPLGNTSAIPSWYSSQHQPQHQQACPSANMSATALLQKAAQIGATSSDPSWLGSLGLKCGNNSQGQDGNNNKYSGMYGSSLVLTTTLGSEADNSGCELSQMHPHKRRHVLNEESGGGQTRDFLGVGVQNHFPHFINQGVDLI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02580 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 473 - -
Gma06g02580 474 MobiDBLite consensus disorder prediction 18 44 - -
Gma06g02580 474 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Gma06g02580 474 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Gma06g02580 474 Gene3D Classic Zinc Finger 95 186 - -
Gma06g02580 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Gma06g02580 474 Gene3D Classic Zinc Finger 58 85 - -
Gma06g02580 474 PANTHER F-BOX ASSOCIATED PROTEIN 30 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02580 Gma-Chr6 49072893 49075770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02580 29 460 IDZ Gene Family AT1G03840 49.687 5.52e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma06g02580 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02580 K25870 - gmx:100790620 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02580 06 49072893 49075770 Gma06g02580 06 49072893 49075770 ECH