Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02556 ATGAGGACCAATGTAGGAGATATTGTTCAAGTAGAAGGAGGGCACATTGTTAGGTCCACAGGTAGAAAAGATCGCCACAGCAAGGTGTACACATCGAAAGGGCCACGCGATCGTCGCGTTAGACTCTCGGCACACACAGCCATTGAGTTCTATGATGTTCAAGACAGGCTTGGCTATGACAGGCCAAGCAAGGCTGTGGACTGGCTCATCAAAAAGGCAAAGACTTCCATTGACAAGCTTGCTGAGCTTCCTCCTTGGCATCCACCTACTAATCATGAGGAAGAAGAGCAGAATGATGCTGCAGGATCAAGTGGAGTCATAGCCATTGaacaacaacaacagcaacagcagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacatcaacagcaacaaTCAGAGTCTTGTGGTTACAACTTTCAGCTCCAAAGGCAATTGGGAGCCTTCATTTCAACACATGTTGACACTGACCACATCAATTTCCAAACCAACAACAACAACTCCTCAGAAGATCTTGGCCTATCCCTCCATTGCTTCCAAGACCACCCTGGCCTTATTCAGTGGCAATCACAACAAGAAGGTGCAAATCAAACACCTCCTTCAAATGAACACCAAATCCAGCAAACCCCTTTTGCCGGATCAACCCCAGTTGGGTTTGAGAACCATTATCAAAGAAGTGTGACTTGGAACAATGAAGCAACAACCACAGATCATGTCAACAGGTTGGGGTTCTTATTCAACTCACAGCCTTATGCTTCAGCTTATGCTCAAAGTGGGGGGACCCTTCAGTCCAGTTTTTCATTTCCAATGACTTCTTCCTCTGAGCTTCACAGGCCTCAGCCAGTGAACCAACCTTCTTCAATCTTTGGCAGCAGGTTTGTGTCTGATGGATTAGCTGGTTTCTGCATTCCAGATAGAATTCAAGTCTTCCTTTCAGGAGTGTTCTCTACCAGATTTGAAACCGAGTGA 981 0.4251 MRTNVGDIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTSIDKLAELPPWHPPTNHEEEEQNDAAGSSGVIAIEQQQQQQQQQQQQQQQQQQQQQHQQQQSESCGYNFQLQRQLGAFISTHVDTDHINFQTNNNNSSEDLGLSLHCFQDHPGLIQWQSQQEGANQTPPSNEHQIQQTPFAGSTPVGFENHYQRSVTWNNEATTTDHVNRLGFLFNSQPYASAYAQSGGTLQSSFSFPMTSSSELHRPQPVNQPSSIFGSRFVSDGLAGFCIPDRIQVFLSGVFSTRFETE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02556 326 PANTHER TRANSCRIPTION FACTOR TCP4 3 312 - -
Gma06g02556 326 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Gma06g02556 326 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 312 IPR005333 GO:0003700
Gma06g02556 326 MobiDBLite consensus disorder prediction 194 213 - -
Gma06g02556 326 Pfam TCP family transcription factor 21 138 IPR017887 -
Gma06g02556 326 Coils Coil 106 138 - -
Gma06g02556 326 MobiDBLite consensus disorder prediction 80 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02556 Gma-Chr6 48751635 48753217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02556 5 252 TCP Transcription Factor Family AT1G53230 39.382 5.24e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma06g02556 TCP 3.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02556 - - gmx:100782826 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02556 06 48751635 48753217 Gma06g02556 06 48751635 48753217 ECH
Gma06g02556 06 48751635 48753217 Gma06g02117 06 36912506 36914909 ECH
Gma06g02556 06 48751635 48753217 Gma12g01482 12 29278343 29280277 ECH
Gma06g02556 06 48751635 48753217 Gma12g02144 12 42284457 42286237 ECH
Gma06g02556 06 48751635 48753217 Gma13g02409 13 38857883 38859043 ECH
Gma06g02117 06 36912506 36914909 Gma06g02556 06 48751635 48753217 ECH
Gma12g01482 12 29278343 29280277 Gma06g02556 06 48751635 48753217 ECH
Gma12g02144 12 42284457 42286237 Gma06g02556 06 48751635 48753217 ECH
Gma13g02409 13 38857883 38859043 Gma06g02556 06 48751635 48753217 ECH
Gma12g01968 12 40274720 40277166 Gma06g02556 06 48751635 48753217 ECH
Gma13g02588 13 40739512 40740927 Gma06g02556 06 48751635 48753217 ECH