Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02545 ATGGAAATGGAAGATTTTTTATGGGGTGGTGGCATTGATGAAGATGTCACCAAGAGGAAAAGTGATGGTTTTGAAGGAAGCAATGGTGTGATTGGAAGTGGGTGGTGTGGTTCATCTTTCTCTCTGGTATTGGATAGGGAGAGAGGGGAGCTTGTGGAGGAACCTGTGAGATTGGAAAAGAAAGGGGTGTCCACTGAGAGAAGCATTGAAGCTTTGAAGAGCCATAGTGAGGCAGAGAGGAAAAGGAGGGCAAGGATTAATGCACATCTTGATACACTTCGCAGTGTGATTCCGGGTGCTATGAAGATGGACAAAGCATCATTACTTGGTGAGGTTATTAGACATTTGAAAGAGCTGAAGAAGAATGCAGCACAAGCTTGTGAGGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAGGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCCGGATTGTTGTCTGATATAAAACAAGCACTAGATGCTCTCCATCTTATGATAACAAGGGCAGATATTGCAACCTTGGAAGGCAGGATGAAGAATGTCTTTGTGATAATTAGTTGCAAAGAACAGAACTTTGAAGATGCCGCATACCGTCAGTTTCTTGCCGTTTCTGTTCACCAAGCTCTCAAGTCTGTGCTCAACAGATTTTCTGTTTCAGAGGACATTTTAGGAACCAGGAAAAGAAGAAGGATTTCTATATTCAGTTCTTCATCTTTAGAAGATTTTTTGTAA 780 0.4115 MEMEDFLWGGGIDEDVTKRKSDGFEGSNGVIGSGWCGSSFSLVLDRERGELVEEPVRLEKKGVSTERSIEALKSHSEAERKRRARINAHLDTLRSVIPGAMKMDKASLLGEVIRHLKELKKNAAQACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIKQALDALHLMITRADIATLEGRMKNVFVIISCKEQNFEDAAYRQFLAVSVHQALKSVLNRFSVSEDILGTRKRRRISIFSSSSLEDFL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02545 259 CDD bHLH_AtAIG1_like 65 141 - -
Gma06g02545 259 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 258 - -
Gma06g02545 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 119 IPR011598 GO:0046983
Gma06g02545 259 PANTHER TRANSCRIPTION FACTOR BHLH30 3 258 IPR045847 GO:0003700|GO:0006355
Gma06g02545 259 Gene3D - 65 127 IPR036638 GO:0046983
Gma06g02545 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 123 IPR036638 GO:0046983
Gma06g02545 259 CDD ACT_UUR-ACR-like 158 200 - -
Gma06g02545 259 Pfam Helix-loop-helix DNA-binding domain 74 119 IPR011598 GO:0046983
Gma06g02545 259 SMART finulus 76 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02545 Gma-Chr6 48600750 48602842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02545 67 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.398 1.17e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma06g02545 HLH 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02545 - - gmx:100784966 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02545 06 48600750 48602842 Gma06g02545 06 48600750 48602842 ECH
Gma07g01995 07 41328645 41332447 Gma06g02545 06 48600750 48602842 ECH