Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02520 ATGGCCTCCTTGCCCTTGGGGCACCACCACCATCACCAACCGGCGGCGGCGACTATACACCCGTCGCAACCGCCGCAGTGTCAGCCGCAACCCGAAGTTCCTCGCCGGAGCTCCGATATGGAGACCGATAAGGATATGTCAGCTACTGTCATTGAGGGGAATGATGCCGTTACTGGCCACATAATCTCCACCACAATTGGAGGCAAAAATGGGGAACCTAAACAGACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGCGGTACAAAAATCGTGAATTGCAGTTAATGCGCTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTTTCCACAACAAGCAAAGATGAACTTTTTCTAAACTTGGTAATGGAATATGTCCCTGAGTCAATGTACCGAGTTATAAAGCATTACACTACTATGAACCAGAGAATGCCTCTCATCTACGTGAAACTGTATACATATCAAATCTTCAGGGGATTAGCATATATCCATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAAGTTCTGGTCAAGGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCAACTGAATACACACCTTCTATTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGCCATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCCCGTCTTCCTAATGGCCATCCACTGCCCCCACTTTTCAACTTCAAACAGGAGTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATTAGGCGGCAGATGGGTCTCAGCTTCCCGCATTCTGCCGGTTCATAG 1260 0.4611 MASLPLGHHHHHQPAAATIHPSQPPQCQPQPEVPRRSSDMETDKDMSATVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPESMYRVIKHYTTMNQRMPLIYVKLYTYQIFRGLAYIHTALRVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTPSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGHPLPPLFNFKQELAGASPELINRLIPEHIRRQMGLSFPHSAGS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02520 419 PANTHER SHAGGY-RELATED PROTEIN KINASE ETA-LIKE 20 413 - -
Gma06g02520 419 CDD STKc_GSK3 74 366 IPR039192 -
Gma06g02520 419 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 20 413 - -
Gma06g02520 419 MobiDBLite consensus disorder prediction 1 43 - -
Gma06g02520 419 ProSitePatterns Protein kinases ATP-binding region signature. 85 109 IPR017441 GO:0005524
Gma06g02520 419 SUPERFAMILY Protein kinase-like (PK-like) 78 387 IPR011009 -
Gma06g02520 419 ProSiteProfiles Protein kinase domain profile. 79 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02520 419 SMART serkin_6 79 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02520 419 Gene3D Phosphorylase Kinase; domain 1 64 158 - -
Gma06g02520 419 Gene3D Transferase(Phosphotransferase) domain 1 159 406 - -
Gma06g02520 419 Pfam Protein kinase domain 79 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02520 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02520 Gma-Chr6 48141275 48146416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02520 83 401 MAP Kinase Gene Family AT3G59790 35.030 3.37e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gma06g02520 Pkinase 4.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02520 K14502 - gmx:100802451 850.506