Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02509 ATGAGCCGCAACATGAACAATTTCACACCTTTGCCAGGGTCATGGCAAAGAGGTTTTAGATCCTTTGATGACCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGCCACCGATGGCAGAAGTTCGGGTGTATTAGCTCGAGAACGATTTTCGGACTTCAGAAATCCTTTAGGATTCCACAGTATACCAAATTTTCCTGCACCACCACCTAGAAGACAACAAATTCATGCTCACAATGAAGATATCGGAAGGCTAAGAGAGATTTTCCTTCACCCCCCTCAAAGATCCACATTCCAAACAAGCACACAAGCTCTCCCGGTGGTAGAAATTACCAAATCAGCAGCTTTGAGCAAGCTCAAGAAAGTAGTCTATGACCCTCCCCCAAAGAGGTATGCTAGGAGGGTGAGCTTATACTACAGAAACAATGCCGCAAAGCCTTTGAAAGAGAAGCAGGGAGAAAATGATGAAGATAGAAAGAGTTGTGCTATTTGTCTAGAAGATTTTGATCCCAGTGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGATTGTATAGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATTGGAAGGGGGAATCATTCATCCTTCAATAACAATGACATTGCAAATTTGGAACCTAGCAACTTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGAAGAATGACTTACTAA 789 0.4271 MSRNMNNFTPLPGSWQRGFRSFDDHTFNHRESNEVPVFYRSHSTHATDGRSSGVLARERFSDFRNPLGFHSIPNFPAPPPRRQQIHAHNEDIGRLREIFLHPPQRSTFQTSTQALPVVEITKSAALSKLKKVVYDPPPKRYARRVSLYYRNNAAKPLKEKQGENDEDRKSCAICLEDFDPSEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVICEIGRGNHSSFNNNDIANLEPSNLINGELLSILRAMEEAFQLGRMTY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02509 262 SUPERFAMILY RING/U-box 165 218 - -
Gma06g02509 262 SMART ringv_2 170 212 IPR011016 GO:0008270
Gma06g02509 262 Pfam Ring finger domain 170 212 IPR001841 -
Gma06g02509 262 SMART ring_2 171 211 IPR001841 -
Gma06g02509 262 ProSiteProfiles Zinc finger RING-type profile. 171 212 IPR001841 -
Gma06g02509 262 CDD RING-H2_PA-TM-RING 171 212 - -
Gma06g02509 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 219 IPR013083 -
Gma06g02509 262 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 262 - -
Gma06g02509 262 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 2 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02509 Gma-Chr6 47786657 47788588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02509 126 258 C3H Transcription Factor Family AT3G58720 48.921 6.55e-39 134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02509 06 47786657 47788588 Gma06g02509 06 47786657 47788588 ECH