Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02490 ATGCCAATGTTTGAGCCTCCTTGTAAGAATGATGGTTTTGAAGTCCAGATTCTAGATCTAGACATGGCGGTGAAAGATGGAGTTTTGGGTGGTGGAGTTGATTATGGGATTGTGGGAAATGGGATTCGTGAAAAATTGAATCTTGCAAAAATGATTGAAGAGTTGGACTTGTGTGAAGTTTCCTCTGTGTTCATTTGCCCAATTTCCCTTGAGCCAATGCATGACCTTGCGACCCTTTGCATTGGCCAAACCTATGAGAGGTGCAACATTCTCAAATGGTTTAGTTTGGACCACTTCACTTGCCTCACCACAATGCAAGAGCTTTGGGATGATTCCCTCACTCCTAACACCACCCTCCACTGTCTGATATCCACTTGA 378 0.4392 MPMFEPPCKNDGFEVQILDLDMAVKDGVLGGGVDYGIVGNGIREKLNLAKMIEELDLCEVSSVFICPISLEPMHDLATLCIGQTYERCNILKWFSLDHFTCLTTMQELWDDSLTPNTTLHCLIST 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02490 125 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 31 125 - -
Gma06g02490 125 Pfam U-box domain 63 123 IPR003613 GO:0004842|GO:0016567
Gma06g02490 125 ProSiteProfiles U-box domain profile. 59 125 IPR003613 GO:0004842|GO:0016567
Gma06g02490 125 SMART Ubox_2 63 125 IPR003613 GO:0004842|GO:0016567
Gma06g02490 125 PANTHER WDSAM1 PROTEIN 31 125 IPR045185 GO:0061630
Gma06g02490 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 125 IPR013083 -
Gma06g02490 125 SUPERFAMILY RING/U-box 54 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02490 Gma-Chr6 47355302 47355679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02490 1 125 U-box Gene Family AT5G65920 65.079 4.06e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02490 - - gmx:100781741 200.675