Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02467 ATGAGGCTGTGGTTTCTAGTTCGTGATTTCCGTTCTTCTATGGTTGAAGGCCTATGTAATTTTATGGCGAGGATTCCTGACAAGATTAGGTCTATTGATGGATCAAAAGAAGCGCTTAAGcttgctgttaggatcatcgatctttggtttgttgggactcctaacaagtctgagcaatcggaaatggtttttgttgattctgagGGTGATCAAATTCATGCTATTTGTAAATCGGACCACCTCAAGTCTTGGAAAGCTGATTTGAAAGAGAATTGCACTTATGTTATGCATAATTTCAAAGTTGTTAAGAATGATGGTCAATTTAGAGTGTGCGAACATGAGTACAAGTTATTTTTTATTGGAGTGACGGTTGTTAGAGAAGCTAATTTGCATGAACTGCCTTTTAAGGAATTTAGATTTGTTGAATTTGCAAATGTTGTTGCTGGCAATTTTGTGTCTGGCCTGTTGGTTGGAAGTTATCCAGCTTCAGTGAGCAATTCCTTCAAGGCGTCAAAACTATTGATTAATGATCCTATATTGGAAATTCAGGAATTTAAAGAGAGGCTTTTAGATTTAGGTGTTGAGGTGAGTCGAGTTTTGCTACCTGGCGATCAAGCAACCTCACAAGTTTCAGGGGGAAGTCAGCTATCATCAAAGGATTCGTTTCTTTCAAAGGCTGAAGCCAAAACTATTTTAGAAATCGATGCCATTTCTGAGGACGTTGTTTGTGTTACGGTGGGGACTATTAGCAAAATAGTCATGGATAACCATTCATGGTCTTATCCAGCCTGTGCTCAATGTCATAGGAAAACTGACATCCAAACAGGACCATTCACATGTGGATGTGGCAAGGATAATGATCAGCCTGTTCTGAGGTATAAAGTTGAAGTCATGGTTACCCAAAACAATGAGAGCAGCACATTTTTGCTCTGGGACCATGAATGTGCTGAATTGATTGGTGAAACAGCTGATGATGTGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGGATGCTTCCCCTCAAGCACTTGACAAATTGTTGGGTCATATGCTTGCTTTTAAGGCATGTTCCAAAATAGATCCTTCCAATGCTGATTGCAATGATGCTACGCATGCTGAATGTCAATCTCTGTCTGTCACAGCTGACCATGATCTGGTTGCGGGATTGCCTTTAACACCCAAAAAGCGGATTCCATCTAATGAAGCCGATGATGAGTTAGGGAGCTCTCAAATTTCGCCAGCCCAACTATCGTCTAACAAATTAACAAGACATTCTCATAAAAGCTAA 1293 0.3743 MRLWFLVRDFRSSMVEGLCNFMARIPDKIRSIDGSKEALKLAVRIIDLWFVGTPNKSEQSEMVFVDSEGDQIHAICKSDHLKSWKADLKENCTYVMHNFKVVKNDGQFRVCEHEYKLFFIGVTVVREANLHELPFKEFRFVEFANVVAGNFVSGLLVGSYPASVSNSFKASKLLINDPILEIQEFKERLLDLGVEVSRVLLPGDQATSQVSGGSQLSSKDSFLSKAEAKTILEIDAISEDVVCVTVGTISKIVMDNHSWSYPACAQCHRKTDIQTGPFTCGCGKDNDQPVLRYKVEVMVTQNNESSTFLLWDHECAELIGETADDVNRVKIEDGDLDLDASPQALDKLLGHMLAFKACSKIDPSNADCNDATHAECQSLSVTADHDLVAGLPLTPKKRIPSNEADDELGSSQISPAQLSSNKLTRHSHKS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02467 430 MobiDBLite consensus disorder prediction 405 423 - -
Gma06g02467 430 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 32 313 - -
Gma06g02467 430 CDD RPA1_DBD_C 225 384 IPR013955 -
Gma06g02467 430 PANTHER REPLICATION FACTOR A 1, RFA1 32 313 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma06g02467 430 MobiDBLite consensus disorder prediction 392 430 - -
Gma06g02467 430 CDD RPA1_DBD_A_like 40 125 - -
Gma06g02467 430 Pfam Replication factor-A C terminal domain 247 356 IPR013955 -
Gma06g02467 430 SUPERFAMILY Nucleic acid-binding proteins 229 365 IPR012340 -
Gma06g02467 430 Pfam Domain of unknown function DUF223 61 148 IPR003871 -
Gma06g02467 430 Gene3D - 27 127 IPR012340 -
Gma06g02467 430 Gene3D - 208 383 IPR012340 -
Gma06g02467 430 SUPERFAMILY Nucleic acid-binding proteins 35 127 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02467 Gma-Chr6 47088334 47091838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02467 152 337 Core DNA Replication Machinery Family AT5G08020 26.064 4.91e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02467 - - gsj:114424125 568.926