Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02458 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGCTTGATCGACGATATTCCCGTTCCGGACGCCACCTTCGGCGTCAATTCCTCCGCCTTCACATGGCCCCCTAACGCCTTGAACGCTTCCTCCAATGTCGGCGTTGAAATTGATGGCTCGTTGGGGGATTCTGACAGTCTCAAAGAGTCTGGCTCAAAGAAAAGGGTTAGGTCTGAGTCATGCGCTGCTTCTGGCTCCAAGGCATGTCGGGAGAAGTTGAGAAGGGATAGGCTTAATGACAAGTTTGTTGAATTGGGCGCCATTTTGGAGCCTGGAAGGCCTGCCAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACCCAGTTACGGGGTGAAGCCCAGAAGTTGAAAGACACTAATCAGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAACGAACTTCGCGATGAGAAACAGAGGCTCAAGGCAGAGAAGGAGAAACTGGAGCAGCAGCTGAAATCTTTGAATGCACAGCCTAGTTTCATGCCTCCCCCTGCTGCAATGCCTGCTGCATTTGCGGCACAAGGCCAAGCCCATGGCAACAAGTTGGTACCTTTTATTAGTTATCCCGGAGTTGCAATGTGGCAATTCATGCCACCTGCTGCAGTGGATACCTCACAGGATCATGTTCTCCGTCCACCAGTTGCCTAA 711 0.5049 MVSRENTNWLFDYGLIDDIPVPDATFGVNSSAFTWPPNALNASSNVGVEIDGSLGDSDSLKESGSKKRVRSESCAASGSKACREKLRRDRLNDKFVELGAILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDTNQGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSLNAQPSFMPPPAAMPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02458 236 CDD bHLH_AtILR3_like 80 155 - -
Gma06g02458 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 145 IPR036638 GO:0046983
Gma06g02458 236 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Gma06g02458 236 Coils Coil 123 178 - -
Gma06g02458 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Gma06g02458 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gma06g02458 236 SMART finulus 81 132 IPR011598 GO:0046983
Gma06g02458 236 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 236 - -
Gma06g02458 236 Gene3D - 63 124 IPR036638 GO:0046983
Gma06g02458 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02458 Gma-Chr6 46923207 46927656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02458 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.130 1.79e-114 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma06g02458 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02458 - - gmx:100788858 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02458 06 46923207 46927656 Gma06g02458 06 46923207 46927656 ECH
Gma12g01230 12 16211401 16214776 Gma06g02458 06 46923207 46927656 GST
Gma13g02533 13 40207583 40210186 Gma06g02458 06 46923207 46927656 PCT
Gma12g02024 12 40896762 40898656 Gma06g02458 06 46923207 46927656 PCT
Gma06g02458 06 46923207 46927656 Gma13g02533 13 40207583 40210186 PCT
Gma06g02458 06 46923207 46927656 Gma12g02024 12 40896762 40898656 PCT