Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02397 ATGAATGTGTTGCGAATAAGTTTTGATCAATTAGAGGATACACACAAGGAAATATTCCTAGATATTGCATGTTTCTTCAACTCTGATCGGGTGGAATATGTGAAGGAAGTTCTAGATTTTCGTGGATTTAATCCTGAATATGGCCTACAAGTTCTCGTTGATAAATCACTCATAACCATGGATTGGTGGGCGATTCGAATGCATGACTTGTTGTGCGATTTGGGCAAGTATATTGTTAGAGAAAAATCACCTAGGAAGCCATGGAAGTGGAGCAGGTTGTGGGATGTTAAAGATTTCCTTAATGTTATGTTAGATAATAAGGTAGCAAAAAATGTTGAGGTCATAATAATTCAAGATCCATATGACATTCTTCGAACAAGAACAATGAGGGTCGATGCTCTATCAACAATGAGTAGCCTTAAGCTTCTCATATTTGGAAATAGGAGAGCTGTCTTCGAAATCGAAATCGAAATCAATTTTTCAGGAACACTTGCTAAGCTTTCCAATGAATTAGGATATCTTTGTTGGCCAAAGTATCCTTTTGAGTGTTTATCACCAAGTATTGAGCCGGACAAACTTGTTGAGTTGATTCTACCTAAAAGCAACATCAAACAACTTTGGGAAGGCACAAAGCCTCTACCCAATTTGAGGCGTTTGGATCTCTCTGGCTCCAAAAATCTAATTAAAATGCCATATATTGGAGATGCCCTATATCTTGAGAATCTTAGTCTTAAAGGATGTATACAACTCGAAGAGATCGGTCTGTCCATTGTTCTTTCACGAAAGCTTACTTCTCTGAGTTTGAGAAATTGTAAAAGTCTTATCAAGTTGCCACCATTTGGAGAGGATCTAATTCTTCAAAATCTAGATCTCGAAGGATGTAAAAAACTCAGACACATTGATCCATCCATCGGTCTTCTAAAAAAGCTCAGAAGATTGAATTTGAAAAACTGCAAAAATCTAGTAAGCTTACCCAATAGCATACTAGGCCTCAATTCTCTTCAATATCTGATTCTCTCTGGCTGTTCAAAACTGTACAACACCGAGTTATTTTATGAACTAAGGGATGCAGAGCAATTGAAGAAGATTGATATAGATGGAGCTCCTATTCATTTCCAATCAACATCTTCCTACTCCAGACAACATCAAAAATCAGTTAGTTGCTTAATGCCTTCCTCCCCAATATTTCCATGGATGCGTGAACTTGATCTAAGTTTCTGTAATTTAGTTGAAATCCCTGATGCTATTGGAATTATGAGTTGCTTAGAAAGGCTAGATTTAAGTGGTAACAATTTTGCTACACTGCCCAACCTCAAGAAGCTTTCCAAACTGTTCTGTTTAAAGTTACAACATTGCAAGCAGTTGAAATCTTTGCCTGAGCTCCCTTCACGGATTGACTTCCAATGTGATGAACCGTATTATTATGCAATAAGTGGATTAGGATTATACATGTTTAACTGCCCAGAATTAGTTGATAGGGAACGCTGCACTGACATGGCTTTTTCATGGATGATGCAAGTGTGTAAGTACCAGGTGAATGGCACATATTATTTATACATTGATGAAAGTGTTAGTCCAGGAAGTGAAATACGAAGGTGGTTCAATAATGAGCATGAGGGAAATTGTGTAAGCTTAGACGCATCTCCTGTTATGCATGACCATAATTGGATTGGCGTTGCGTTTTGTGCAATATTCGTCGTACCTCATGAAACACTCTCAGCAATGAGTTTTTCAGACACAGAAAGGAAATACCCTGATTATAAAGATATTCCAGTGGATTTTTATGGAGATCTAGATCTAGAACTTGTTTTAGACAAATCAGATCACATGTGGCTATTCTTTGTGGATCGATATGACTCCATTCACCAATTCCATCTCAAGCACAGATATCTTGGCAGATTGGTTTCGAGATATGATGGAGTGAGGAAAGAGTCATCATATGCGGAGGTGAAGAAATACGGATATCGCTGGCTATATAAATGGGATATAGAAGGGCCATCAAATCCGTTGGCTAGGAAGCGCAAATTTGGGGAAAATGAAGGAATAATGTGA 2052 0.3787 MNVLRISFDQLEDTHKEIFLDIACFFNSDRVEYVKEVLDFRGFNPEYGLQVLVDKSLITMDWWAIRMHDLLCDLGKYIVREKSPRKPWKWSRLWDVKDFLNVMLDNKVAKNVEVIIIQDPYDILRTRTMRVDALSTMSSLKLLIFGNRRAVFEIEIEINFSGTLAKLSNELGYLCWPKYPFECLSPSIEPDKLVELILPKSNIKQLWEGTKPLPNLRRLDLSGSKNLIKMPYIGDALYLENLSLKGCIQLEEIGLSIVLSRKLTSLSLRNCKSLIKLPPFGEDLILQNLDLEGCKKLRHIDPSIGLLKKLRRLNLKNCKNLVSLPNSILGLNSLQYLILSGCSKLYNTELFYELRDAEQLKKIDIDGAPIHFQSTSSYSRQHQKSVSCLMPSSPIFPWMRELDLSFCNLVEIPDAIGIMSCLERLDLSGNNFATLPNLKKLSKLFCLKLQHCKQLKSLPELPSRIDFQCDEPYYYAISGLGLYMFNCPELVDRERCTDMAFSWMMQVCKYQVNGTYYLYIDESVSPGSEIRRWFNNEHEGNCVSLDASPVMHDHNWIGVAFCAIFVVPHETLSAMSFSDTERKYPDYKDIPVDFYGDLDLELVLDKSDHMWLFFVDRYDSIHQFHLKHRYLGRLVSRYDGVRKESSYAEVKKYGYRWLYKWDIEGPSNPLARKRKFGENEGIM 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02397 683 Pfam Leucine Rich Repeat 192 211 IPR011713 -
Gma06g02397 683 SUPERFAMILY "Winged helix" DNA-binding domain 2 102 IPR036390 -
Gma06g02397 683 ProSitePatterns 'Homeobox' antennapedia-type protein signature. 395 400 IPR001827 GO:0003677|GO:0003700|GO:0006355
Gma06g02397 683 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1 274 - -
Gma06g02397 683 SUPERFAMILY L domain-like 66 464 - -
Gma06g02397 683 Pfam Leucine Rich Repeat 309 331 IPR001611 GO:0005515
Gma06g02397 683 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 274 IPR044974 GO:0006952
Gma06g02397 683 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 273 664 IPR044974 GO:0006952
Gma06g02397 683 ProSiteProfiles Leucine-rich repeat profile. 421 442 IPR001611 GO:0005515
Gma06g02397 683 Gene3D Ribonuclease Inhibitor 285 369 IPR032675 -
Gma06g02397 683 Gene3D Ribonuclease Inhibitor 128 284 IPR032675 -
Gma06g02397 683 Gene3D Ribonuclease Inhibitor 371 490 IPR032675 -
Gma06g02397 683 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 273 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02397 Gma-Chr6 45939090 45941486 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02397 1 351 WRKY Transcription Factor Family AT5G45050 32.426 2.39e-39 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02397 - - gmx:100778550 1114.37