Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02242 ATGGACCACAACAACAACAACAGGGTGCCAAGAATCCATGCATTCTCATCACCCGCACCACCTTCCCCTCCCATGCTTTCCTTCATTGTCGCTCTTTCCCTCACAACACTAACCTTCATGTGCCTCTACGTTTTCTCATCCATTGTTTCCGTGGCCATTCTTCTAGCCCTTTGCATCACCATCCTCTTAGCAGAGGATTTCAAGAAGGGAGAAGAGTGCCTTGTTTTCTCTGTTTGTGGCCACACATTTCATTGTGATTGTATAAAGCATTGGTTAGAAGAAAAGCCCAGTTGCCCAATTTACCGTCATTATATGCCATCATCAGTCACCATGAGCACCAAATCTAGAAGCATGGAAATCTTGAGAATCTAG 372 0.4489 MDHNNNNRVPRIHAFSSPAPPSPPMLSFIVALSLTTLTFMCLYVFSSIVSVAILLALCITILLAEDFKKGEECLVFSVCGHTFHCDCIKHWLEEKPSCPIYRHYMPSSVTMSTKSRSMEILRI 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02242 123 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 62 - -
Gma06g02242 123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 118 IPR013083 -
Gma06g02242 123 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 65 118 - -
Gma06g02242 123 SUPERFAMILY RING/U-box 66 102 - -
Gma06g02242 123 Pfam RING-H2 zinc finger domain 70 100 IPR024766 GO:0008270
Gma06g02242 123 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 62 - -
Gma06g02242 123 ProSiteProfiles Zinc finger RING-type profile. 57 102 IPR001841 -
Gma06g02242 123 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 65 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02242 Gma-Chr6 41868351 41868949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02242 56 105 C3H Transcription Factor Family AT2G17450 44.000 5.98e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02242 - K19039 vra:111240582 85.8853