Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02216 ATGGGTGGTGTCTGTTGCAAGCCCTCTGCCATTGAGGATAGCAAGGAGAGTCCAAGGGAGCGTATGTCGACCAAGTCGGCTTCGTTGGACTCTTGTGTGCCGAGGGGTGCTTCGTTGAGGAGGGAGGATGCATATAGGGTGAAAGATAGGTATGATGGTAATAATGTGAGGACTGCTTTGATTGATAAGCAAGGGAACGGTTCTGTGCGGTTGCAAAGTGAAAATGTTGAGAGGAAGAGGGAGAGAATGGAGTGTGTTGTTGCTGCTCAACAACATCCGGGGGCTGGTAGTGTTCCCAAGGCCTTGGAAGGGGAGCAGGTTGCAGCTGGATGGCCATCCTGGCTGGCAGCAGTGGCTGGAGAGGCTATCAAGGGATGGTTGCCGCGCCGTGCCGATTCGTTCGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGTAATGTTTATAGGGCTCGTGATCTTGAGCAAAAGAAAATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCAGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATAAAACTGGAAGGTCTTGTCACATCAAGGATGTCTTGCAGCTTATACCTAGTTTTTGAATACATGGAGCATGATTTGGCTGGGCTTGCATCACATCCTAAACTGAAGTTTACTGAAGCACAGGTAAAATGTTACATGCAGCAACTTTTACGAGGACTTGAACACTGCCACAACTGTGGTGTGCTGCACCGTGACATTAAGGGTTCGAACCTTTTGATTGACAACAATGGCATCTTGAAGATTGCAGACTTTGGTTTGGCAAGTGTTTTTGATCCAAATCGAACACAGCCTCTGACAAGCCGAGTTGTCACTCTTTGGTATCGCCCACCAGAGCTTTTACTGGGTGCCACATACTATGGCACTGCTGTAGATTTATGGAGTACAGGCTGTATACTTGCTGAGTTGTATGCTGGCAAACCTATAATGCCTGGAAGAACTGAGGTGGAGCAGTTACATAAAATTTTTAAACTGTGTGGTTCACCTTCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACAATATTTAAGCCCCAACAACCCTATAGGCGTTGTGTTGCTGACACATTCAAGGATTTCGCTGCACCTGCTTTAGCACTCATGGAGACTCTTTTGTCCATAGATCCTGCTGATCGTGGAACTGCAGCATCTGCTTTGAAGAGTGAGTTCTTTACAACAAAGCCTCTACCTTGTGATCCTTCAAGTTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAACTTCGGGATGAACAAGCAAGAAGGCAGGGTGCAACAGGAAGCAAGGGCCAGAGACATGATCTTGAAAGAAGAGGGGCAAGAGAATCTCGAGCTGTTCCTGCACCTGATGCCAATGCTGAACTGCCACTGTCAatgcagAAGAGACAAAGTCAGGCTCAATCAAAAAGCAGAAGTGAGAAGTTTAATCCTCATCTTGAAGAAGCTTCTGGATTTCCCATCGATCCCCCCAGACCGTCACAAGCTGTAGAAGTAGGTATAGAACCTCAGGTACCGCAGCATAAAAGAGCCTCCCATTCGGGTCCGCTGGCTCACCGAACTGCATGGGGTAAAGCTGGGAAGAACCAGGATGATGCTCCAAAGATTTCAGTCGGGGGCGATCTATCAACAATCTCAGGCTTAGTTGCAGCTAGGAGTATGTTGTCAGATGATCGCAGAGAAAGATCTGGATCGTCACAAATGGAGGCATCAAAATTGATGAACAGGTTCCCAGGATCATTCAAGGACATCTCTGAATTGTTGATAAAACAGGATCAAAGGCATCATGTACCGGGCCAAGTAGGCACTTCCCAAAAGGAAGAAGGGAGAAGCAGCAACAAAGACCTTGTTCTTGTTGGTTATGGATCAAAGGGTCATAAAATTCATTACTCTGGTCCATTAACATCAAGCAACATGGATCAGGTGTTGAAAGACCATGACTGCCAAATTCAAGAGGCGGTTAGACGGGCACGTTTGGATAAGGCAAAAATGAGAAGGCTCCAAGCTGAAGGGAACCAGATAACCAATTCATTATTTGTTTCAGGCCGTTGA 2133 0.459 MGGVCCKPSAIEDSKESPRERMSTKSASLDSCVPRGASLRREDAYRVKDRYDGNNVRTALIDKQGNGSVRLQSENVERKRERMECVVAAQQHPGAGSVPKALEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPKLKFTEAQVKCYMQQLLRGLEHCHNCGVLHRDIKGSNLLIDNNGILKIADFGLASVFDPNRTQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVADTFKDFAAPALALMETLLSIDPADRGTAASALKSEFFTTKPLPCDPSSLPKYPPSKEFDAKLRDEQARRQGATGSKGQRHDLERRGARESRAVPAPDANAELPLSMQKRQSQAQSKSRSEKFNPHLEEASGFPIDPPRPSQAVEVGIEPQVPQHKRASHSGPLAHRTAWGKAGKNQDDAPKISVGGDLSTISGLVAARSMLSDDRRERSGSSQMEASKLMNRFPGSFKDISELLIKQDQRHHVPGQVGTSQKEEGRSSNKDLVLVGYGSKGHKIHYSGPLTSSNMDQVLKDHDCQIQEAVRRARLDKAKMRRLQAEGNQITNSLFVSGR 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02216 710 Pfam Protein kinase domain 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02216 710 MobiDBLite consensus disorder prediction 446 472 - -
Gma06g02216 710 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02216 710 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Gma06g02216 710 MobiDBLite consensus disorder prediction 485 500 - -
Gma06g02216 710 MobiDBLite consensus disorder prediction 446 568 - -
Gma06g02216 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Gma06g02216 710 SUPERFAMILY Protein kinase-like (PK-like) 128 426 IPR011009 -
Gma06g02216 710 CDD STKc_CDK9_like 134 418 - -
Gma06g02216 710 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Gma06g02216 710 PANTHER CELL DIVISION PROTEIN KINASE 1 692 - -
Gma06g02216 710 MobiDBLite consensus disorder prediction 620 639 - -
Gma06g02216 710 MobiDBLite consensus disorder prediction 1 33 - -
Gma06g02216 710 PANTHER CYCLIN-DEPENDENT KINASE 1 692 - -
Gma06g02216 710 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02216 710 Coils Coil 677 697 - -
Gma06g02216 710 Gene3D Transferase(Phosphotransferase) domain 1 217 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02216 Gma-Chr6 40571501 40579434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02216 126 475 Core Cell Cycle Gene Families AT5G10270 52.459 3.91e-119 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma06g02216 Pkinase 3.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02216 - - gmx:100798022 1408.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02216 06 40571501 40579434 Gma06g02216 06 40571501 40579434 ECH