Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02159 ATGGCTCCAAGGGATATCAATAGATCCAACGTTGTTGTTGTTGCCGGAGTATCCAACCCGACCCATAAAGAGATCCGTTACCGCGGCGTGAGGAAGCGGCCGTGGGGCCGCTACGCCGCCGAGATCCGCGATCCAGGCAAGAAGACACGCGTGTGGCTAGGAACGTTTGACACGGCGGAGGAGGCGGCGCGTGCGTATGACACGGCGGCGCGTGAGTTCCGCGGCACGAAGGCGAAGACCAATTTCCCCACCCACGCGGCGGCGGCGCGTAGTCCCAGCCAGAGCAGCACGCTGGACTCCTCGTCTCCGCCGCCGCTGGACCTTACTCTTGCCGCCCCACTCACCGCCGCGGGCGCGTTGGTTTTCCCGGTGGCGCGTCCCGTGGTGTTCTTCGACGCTTTTGCGCGTGCCGAGGTGCGCGCGTCGTTCGATCTTCCCGTGGCGGGGTTCAGCGACTCGGACTCGTCCTCGGTCGTGGACTACGAGCGGGTCCCACATCGGAAAGTGTTGGATCTTGACCTTAATGTCCCTCCTCCGCCCGAGGTTGCCTGA 552 0.6449 MAPRDINRSNVVVVAGVSNPTHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGTKAKTNFPTHAAAARSPSQSSTLDSSSPPPLDLTLAAPLTAAGALVFPVARPVVFFDAFARAEVRASFDLPVAGFSDSDSSSVVDYERVPHRKVLDLDLNVPPPPEVA 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02159 183 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Gma06g02159 183 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 173 - -
Gma06g02159 183 MobiDBLite consensus disorder prediction 86 103 - -
Gma06g02159 183 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Gma06g02159 183 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Gma06g02159 183 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Gma06g02159 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 19 173 - -
Gma06g02159 183 MobiDBLite consensus disorder prediction 77 103 - -
Gma06g02159 183 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Gma06g02159 183 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Gma06g02159 183 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Gma06g02159 183 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02159 Gma-Chr6 38835139 38835813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02159 17 139 AP2-EREBP Transcription Factor Family AT3G15210 58.553 1.22e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma06g02159 AP2 5.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02159 K09286 - gmx:100786709 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01049 12 11894047 11894664 Gma06g02159 06 38835139 38835813 ECH
Gma06g02603 06 49332950 49333923 Gma06g02159 06 38835139 38835813 ECH
Gma06g02159 06 38835139 38835813 Gma15g00730 15 6014684 6015615 ECH
Gma06g02159 06 38835139 38835813 Gma06g02159 06 38835139 38835813 ECH