Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02144 ATGGGGGATTTCATCTTCTCCTTCAAAACACAACAACAAGAACATCATGCACACCACCAAAGAGCAAAGCATAACAACAACAAGAAGAGGCTAACCGAGGACCAAGTTGCAATTCTCGAGAAGTGCTTTTCCTCCAACATGAAGCTCGAACCGGAGCAGAAGTTCCACCTTGCAAACCAACTTGGTCTGCCTCCAAGACAAGTTGCAATTTGGTACCAAAACAAAAGGGCACGATGGAAGACCCAAAGCCTTGAGGTGGACCATGGTGTGCTTCAGGCAAGGCTAGAGAATGTGGTGGCTGAAAAGAAGCAGCTAGAGAAAGATGTTGAAAGGCTCAAAGCTGAGCTTAAGAAGGCTCAAGAGATGTTGCTTATTACCAATAGTGTCAAAGGTGGAGACCATAATAATAATAATGCTTGTGAATTTTCAACTTCTTTTGAAGAAGGAGGGAGTTCTGGGGTGGTGCTTGATGATGCCACTTATCATCATCATCATGAGTGTTGGCAAAGTGGTGGTGAGGTTATGCAGGTTGAGGAGCTCTATGCTTACTTCGTGGGTGCAAATTATGGGACAGGCTTGCATGAGAAAGGGCATAAAATATAA 603 0.4428 MGDFIFSFKTQQQEHHAHHQRAKHNNNKKRLTEDQVAILEKCFSSNMKLEPEQKFHLANQLGLPPRQVAIWYQNKRARWKTQSLEVDHGVLQARLENVVAEKKQLEKDVERLKAELKKAQEMLLITNSVKGGDHNNNNACEFSTSFEEGGSSGVVLDDATYHHHHECWQSGGEVMQVEELYAYFVGANYGTGLHEKGHKI 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02144 200 CDD homeodomain 28 83 IPR001356 GO:0003677
Gma06g02144 200 MobiDBLite consensus disorder prediction 9 28 - -
Gma06g02144 200 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Gma06g02144 200 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52 11 191 - -
Gma06g02144 200 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 191 IPR045224 GO:0003700
Gma06g02144 200 Gene3D - 18 86 - -
Gma06g02144 200 SMART HOX_1 24 86 IPR001356 GO:0003677
Gma06g02144 200 Coils Coil 88 129 - -
Gma06g02144 200 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Gma06g02144 200 Pfam Homeodomain 27 80 IPR001356 GO:0003677
Gma06g02144 200 SUPERFAMILY Homeodomain-like 14 83 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02144 Gma-Chr6 38030058 38030894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02144 26 192 Homeobox Transcription Factor Family AT5G53980 45.238 7.63e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gma06g02144 Homeodomain 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02144 - - gmx:100781030 387.497