Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02136 ATGGATCAAATGAGTCAGCAAAGGCATGGCTATTTTCATTCCGAAAGTATCCATTTCAGAGGCAGCAACATCTCTCCGCCTAATGTATGCACACTCGTGACAGCCTCAGGGCACGGAACTAATCTAGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGATGTATGGAATGACACAATACAATGGAGTTCAACATCAACATAATCTTGATATGGGTGTTCCAGCTGCTGCCAACATATATTATTCTAGCATGAATCCTTCATCTGGTACAGCTGCATCTCTAAATGCTGAAGTTAGGAGAGGAAATTATCAATATTTCAATGCCTCGGCTAGTTCTACAGTTGCTCCCCCTAACGCAAGACACACTGAAAATGGCATCCCCTCACTACCACATTGTACTTCGTGGAGCAGATCAGGCGAGTCTATGATGGTGCGTGACCCTAACCGTATAACTCAAGGAAATTATTTAAGTCAACACTTTCAACCAGCAGCTCCTCCTCCCTGGCTGGACCAGCAGTTGAATAGCAATAATAATGATGGTCATGCTTTGCCTTGGCATCAGTCTCTTCCAATGCCATATGTACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAATGCAAGAATGGGTCCTCAGAGATATCATGATACAGCTGGCAGCAGAAGTGGCCACAGATTTCCTCATCCTCCTCTTGTCAACCCACACTATCATAGCTTTCATCATCAAACACAGCCTGTGCAAGAAATGAGAGGTCACTCCATCAACTTTCACCCCCCTCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATGCATCACGAAGTTCTTCGATCTTCATACAAGATGCTATTGAGATGGGTGCTAGGCATGTTGGCGCTGCACCATTTGCTGGTTCACGTATATACCGACCCCATAGGGGCAGCATGCATGAGACTACTCTTAGACATCGAAATCTTCCTCCCGTGACCTTTCTCCAAGTTGATGACGTTACTTTACTGGTTGACCATCATAATGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGGGAGCGGATTGGCAAAGTAAACACAGGTTTGTCAGAGGAAATGATTACAAGTCAAATGAAGACAAAATCTTATTTATTACTAGCTACTAATGCTATTAACTTGGAGGAGGCAGCTTCCGAGGAACAGGAAACTGATTCTTGCATAATATGCCAGGATGAATATAAAAACCAAGAAAAAATTGGTATTCTTCAATGCGGGCACGAATATCACGCAGACTGTTTAAAGAAATGGTTACTTGTGAAAAATGTGTGCCCCGTATGCAAATCAGAAGCATTGACTCCTGGAGAGAAGTGTGTATAA 1377 0.4292 MDQMSQQRHGYFHSESIHFRGSNISPPNVCTLVTASGHGTNLDSHYLLDAYDNGMMYGMTQYNGVQHQHNLDMGVPAAANIYYSSMNPSSGTAASLNAEVRRGNYQYFNASASSTVAPPNARHTENGIPSLPHCTSWSRSGESMMVRDPNRITQGNYLSQHFQPAAPPPWLDQQLNSNNNDGHALPWHQSLPMPYVQAPSANGSSLENARMGPQRYHDTAGSRSGHRFPHPPLVNPHYHSFHHQTQPVQEMRGHSINFHPPPPVTAPSYRVPTNASRSSSIFIQDAIEMGARHVGAAPFAGSRIYRPHRGSMHETTLRHRNLPPVTFLQVDDVTLLVDHHNDMRLDIEDMSYEELLALGERIGKVNTGLSEEMITSQMKTKSYLLLATNAINLEEAASEEQETDSCIICQDEYKNQEKIGILQCGHEYHADCLKKWLLVKNVCPVCKSEALTPGEKCV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02136 458 Pfam Ring finger domain 404 447 IPR001841 -
Gma06g02136 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 367 451 IPR013083 -
Gma06g02136 458 SMART ring_2 406 446 IPR001841 -
Gma06g02136 458 ProSiteProfiles Zinc finger RING-type profile. 406 447 IPR001841 -
Gma06g02136 458 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 86 455 IPR045191 GO:0061630
Gma06g02136 458 SUPERFAMILY RING/U-box 405 451 - -
Gma06g02136 458 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 86 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02136 Gma-Chr6 37918730 37925357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02136 333 451 C3H Transcription Factor Family AT2G15530 49.580 2.48e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02136 K19041 - gmx:100779069 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02136 06 37918730 37925357 Gma06g02136 06 37918730 37925357 ECH