Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02126 ATGTACAAGAACCAGCTTCAAGAGCTGGCCCAACGGAGCTGCTTTAATCTGCCTTCCTACATGTCTATTCGGGAAGGTCCCAATCACGCGCCAAGGTTCAAGGCCACCATCAAATTTAACGGCGAGATCTTCGAGACCCCTCACTACTGCTCCACTCTCCGTCAGGCCGAACACTCCGCCGCTGAAGTCCCTCTCAATTCCCTCTCCCACCGTGGCCCCTCCCATTCCCTCGCCACTAAGATCCTCGATGAGACTGGAGTGTACAAGAACCTTGTACAGGAAATTGCGCAAAGGGTAGGAGCTCCATTGCCTCATTACATAACGTACAGGTCAGGCTTAGGACATTTACCTATTTTTATCAGGATAGTAGAACTGACTGGAATCACGTTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCTGAGAAAAATGCAGCTATGGCAGCTTGGTCCGCTTTAAAACGATATCAAATCACTTCTGTAGATCATACTGGAATAAAGTCTAATGAACTGTTCCAGTTGAAGCAAGGATTGCTTGTAGATTTTTCTGATGCTAAACTTAATGAAGTATTGAAATCAAACAATTTGGATAGTGTCTCAACTCAATTGCTTTTTAATATAGGAAATAGGATCCTAAGTGATATCTTTGAAAGGAAAAATGGAGATGTACCTCAGGCTCATcgtgttgcatgcctgttgaggaaaattctctgcaaATCAAGACCCCGCCACCGGTGGAGAGCTACACTTAATAGGCTACCAACGAAGCTGAATTTGAAGAAAAGAAGGGTGTTGCTGAAAAATGATCTTGGATTATGCTTGTTTTGTGGCAAAGATGTGGAGTCAGAGGAACATTTATTGCTAACTTGCTGTGTAACAGAGAGGATCTGGAAGCACTGGTGTAGCTGTATTGGTTCTCATGTGGTTATGCCTAATGATCTGAGAACACACTACTGGCAGCACCCCTCGATGGTGAGAGGGAAATTGGGAGGTATGGCTTGGACGATGGTATCGTTTACCATCATCTGGCAAGTGACTTTCTCCAAGAGAAGCAAAGGGTTTTTCAAGAAGGCTCTGGAATTGTCAGCCCTTTGTGATGCACACATAGCTCTCATTGTTTTTTCTACAACTAGCAAGCTCTTTGAGTATGCCAGTTCAAGTATGCATCAAGTAATTGAAAGGCGCGATAACCATTCAACAATGCATAGACTGGATCGCCCCTCTATTGAGCTGCAGGCCTTGGTGAACTTGATATTAGCTTTAGGCTGGGTACCCCATTCAAACCAATTGATAGGGGTCTTTCCTGCTGCAAGCTCTCATTCACTTCCTGAGCCGTATAGGAGACTTATGACAGATCCAAACTCACCAATCATTGATTTTTATCTAATTGACTTTGAAGTGGACATGAATAGCAAACGCTTTGCTTGGCAGCAAGACTTGGAAATAGCCAAAAGAACACATGAAGAACATGTTTCAGAGTTAGAATTGCAAGCTACTGAATCTGAAGCTGAATATGAAAAAAGAATAGAGGGACTTAAGCTTCATCTTGTAGATGCAAGAATGCAAGTGAAGGAACTAGAGGCATTTTCCGAATCCAGATTTTTGAAATGGAAGAATAAAGAGGATACCTATCAAACTATTGAACTGAGAGCTGCCATGAAGTCTGTCAAAGATGATGTGATAAAAACAAAAAGAAACTACTTAGAGGAATTCAAGTACTTTGGAATCAAGTTGAAAGGTCTAGCTAAGGCTGTTGAAAATTATCATGTAGTTATAGCTGAAAATAGGAAATTGTATAATGAAGTTCAAGATTTGAAAGGTATGTATTATATGGTGCTTATATGA 1845 0.4092 MYKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSAAEVPLNSLSHRGPSHSLATKILDETGVYKNLVQEIAQRVGAPLPHYITYRSGLGHLPIFIRIVELTGITFTGEPAKNKKQAEKNAAMAAWSALKRYQITSVDHTGIKSNELFQLKQGLLVDFSDAKLNEVLKSNNLDSVSTQLLFNIGNRILSDIFERKNGDVPQAHRVACLLRKILCKSRPRHRWRATLNRLPTKLNLKKRRVLLKNDLGLCLFCGKDVESEEHLLLTCCVTERIWKHWCSCIGSHVVMPNDLRTHYWQHPSMVRGKLGGMAWTMVSFTIIWQVTFSKRSKGFFKKALELSALCDAHIALIVFSTTSKLFEYASSSMHQVIERRDNHSTMHRLDRPSIELQALVNLILALGWVPHSNQLIGVFPAASSHSLPEPYRRLMTDPNSPIIDFYLIDFEVDMNSKRFAWQQDLEIAKRTHEEHVSELELQATESEAEYEKRIEGLKLHLVDARMQVKELEAFSESRFLKWKNKEDTYQTIELRAAMKSVKDDVIKTKRNYLEEFKYFGIKLKGLAKAVENYHVVIAENRKLYNEVQDLKGMYYMVLI 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02126 614 Pfam Double-stranded RNA binding motif 88 152 IPR014720 -
Gma06g02126 614 Pfam Double-stranded RNA binding motif 2 66 IPR014720 -
Gma06g02126 614 Gene3D - 423 510 - -
Gma06g02126 614 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Gma06g02126 614 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 148 243 - -
Gma06g02126 614 PRINTS MADS domain signature 349 364 IPR002100 GO:0003677|GO:0046983
Gma06g02126 614 PRINTS MADS domain signature 364 385 IPR002100 GO:0003677|GO:0046983
Gma06g02126 614 PRINTS MADS domain signature 329 349 IPR002100 GO:0003677|GO:0046983
Gma06g02126 614 ProSiteProfiles MADS-box domain profile. 344 387 IPR002100 GO:0003677|GO:0046983
Gma06g02126 614 SMART DRBM_3 88 154 IPR014720 -
Gma06g02126 614 SMART DRBM_3 2 69 IPR014720 -
Gma06g02126 614 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 344 383 IPR002100 GO:0003677|GO:0046983
Gma06g02126 614 SUPERFAMILY dsRNA-binding domain-like 88 169 - -
Gma06g02126 614 PANTHER KINESIN-LIKE PROTEIN KLP-3 455 608 - -
Gma06g02126 614 PANTHER KINESIN-LIKE PROTEIN KLP-3 148 243 - -
Gma06g02126 614 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Gma06g02126 614 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Gma06g02126 614 Gene3D - 84 154 - -
Gma06g02126 614 Gene3D - 2 83 - -
Gma06g02126 614 Pfam Xrn1 helical domain 428 504 IPR041412 -
Gma06g02126 614 Coils Coil 477 504 - -
Gma06g02126 614 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Gma06g02126 614 Pfam zinc-binding in reverse transcriptase 244 297 IPR026960 -
Gma06g02126 614 SMART madsneu2 324 386 IPR002100 GO:0003677|GO:0046983
Gma06g02126 614 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Gma06g02126 614 SUPERFAMILY SRF-like 344 406 IPR036879 GO:0003677|GO:0046983
Gma06g02126 614 Gene3D - 345 414 IPR036879 GO:0003677|GO:0046983
Gma06g02126 614 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 455 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02126 Gma-Chr6 37216820 37228197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02126 344 416 MADS-box Gene Family AT2G22540 60.811 4.48e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma06g02126 XRN_M 6.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02126 - - gmx:102666975 306.99