Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02124 ATGGCGAGGATTCCTAACAAGATTAGGTCTATTGATGGATCAAAAGAAACGCTTAAGCTTGCTGTTAGGATCACCGATCTTTGGTTCGTTGGGACTCCTAACAAGTCTGAGCAAGCGAAAATGGTTTTTGTTGATTTTGAGGGTGATCAAATTCATGCTATTTGTAAATCGGACCACCTCAAGTCTTGGAAAGCTGATTTGAAAGAGAATTGCACTTATGTTATGCATAATTTCAAAGTTGTTAAGAATGATGGCAATTTTGTGTCTGGCCTGTTGTTTGGAAGTTATCCAGCTTCAGTGAGCAATTCCTTCAAGGCGTCAAAACTATTGATTAATGATCCTATATTGGAAATTCAGGAATTTAAAGATAGGCTTTTAGATTTAGGTGTTGAGGTGAGTCGAGTTTCGCTACCTGGCGATCAAGCAAGCTCACAAGTTCCAGGGGGAAGTCAGCTATCATCAAAGGATTCGTTTCTTTCAAAGGCCGAAGCCAAAACTATTTTAGAAATCAATGCCATTTCTGAGGACGCTGTTTGTGTTACGGTAGGGACTATTAGCAAAATAGTCATGGATAACCATTCATGGTGTTATCCAGCCTGTGCTCAATGTCATAGGAAAACTGACATACAAATAGGACAATTCACATGTGGATGTGGCAAGGATAATGATCAGCCTGTTCTAAGGTATAGAGTTGAAGTCATGGTTACACAAAACAATGAGAGTGACAAATTTTTGCTCTGGGACCGTGAATGTGCTGAATTGATTGGCCAAATAGCTGATGATGTGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTCCCCTCAAGCACTTGACAAATTGTTGGGTCATGTGCTTGCTTTTAAGGCATGTTCCAAAATAGATCCTTCCAATGTTGATTGCGATGATGCTACGCATGCTGAATGTCAATCTCTATCTGTCACAGCTTACCATGATCCGGTTGTGGGGTTGCCTTTAACACCCAAAAAGCGGATGTCATCTGATGAAGCCGATGATGAGTTAGGGAGCTCTTAA 1044 0.4052 MARIPNKIRSIDGSKETLKLAVRITDLWFVGTPNKSEQAKMVFVDFEGDQIHAICKSDHLKSWKADLKENCTYVMHNFKVVKNDGNFVSGLLFGSYPASVSNSFKASKLLINDPILEIQEFKDRLLDLGVEVSRVSLPGDQASSQVPGGSQLSSKDSFLSKAEAKTILEINAISEDAVCVTVGTISKIVMDNHSWCYPACAQCHRKTDIQIGQFTCGCGKDNDQPVLRYRVEVMVTQNNESDKFLLWDRECAELIGQIADDVNRVKIEDGDLDLNASPQALDKLLGHVLAFKACSKIDPSNVDCDDATHAECQSLSVTAYHDPVVGLPLTPKKRMSSDEADDELGSS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02124 347 CDD RPA1_DBD_C 161 298 IPR013955 -
Gma06g02124 347 MobiDBLite consensus disorder prediction 328 347 - -
Gma06g02124 347 Pfam Replication factor-A C terminal domain 183 269 IPR013955 -
Gma06g02124 347 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 11 267 - -
Gma06g02124 347 SUPERFAMILY Nucleic acid-binding proteins 165 300 IPR012340 -
Gma06g02124 347 CDD RPA1_DBD_A_like 19 87 - -
Gma06g02124 347 Gene3D - 5 107 IPR012340 -
Gma06g02124 347 PANTHER REPLICATION FACTOR A 1, RFA1 11 267 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma06g02124 347 Gene3D - 148 318 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02124 Gma-Chr6 37199336 37201792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02124 88 273 Core DNA Replication Machinery Family AT5G08020 25.532 5.23e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02124 - - gsj:114424125 451.055