Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02090 ATGGATCAAATGAGTCAACAAGTCTATTTTCACTCCGAAAGTATCCATTTCAGTGGCACCAACATCTGTCTAGCTTCAGGGAATGGAATTAGTTTAGATTGCCATTATGTACTAGATGCTCATGACAGCTATTTAGATCAGCACTTTCAACCATATGTACAAGGTCATGCTTTGGCTTGGCATCTGTCTCTTCCAGTGCCATATGTACAAGCTTTCATTGCTAATGGAAGTTCATCAGAGAATGGAAGAATTGGtccacagagatatcatgatacaactagcagcagaggtggccacagatttccacaaagatatcatgatacaactggcagcagaagtggccacagatttccacaaagatatcatgatacaactggcagcagaagtggccacagatttccacagagatatcatgattcaactggcagcagaagtggccacagatttccCCATCCTCCTCCACAGTACCATAGCTTTCATCATCAAGTACTGCCTGCACAAGTGATCAGAGGTCACTCCTTCAACATTCATCCTCCCGTAACTGCACCTTCGTATAGAGTTCCAACAAATCCTTCACACGGTTCTTCAATCCTCATACACGATGCTTTTGAGATGGGTGCTAGGCATCCTGGCTTTGCACCATTTGCAGGCGCACGCATACGCCAGTCTCATAGAGGCAACTTGCAGGAGATGATAACTCTTATAAATCTTCCTCCTGCAGTCTTTTTCCCAGATGATGATGTTGCTTTACTGGTTGACCATCATACTGATATGCACTTGGACACTGAAGATATGTCTTATGAGGCAAGTATACTATGCATAGATCTTCTTGAATTAGGTGAGCAGATTGGCAACGCAAAATCGGGTTTATCAGAAAAAATAATTACAAGTCAAATGAAGACCAAAACTTATATACTACCTACTAATGCTACTAACTTGGAGGAGGCAGATTCTGAGGAACAGGAAACTGATCTTTGCATAATATGCCAGGATGAATATAAGAACAAAGAGAATATTGGAATTCTTCGATGCGGCCATGAATATCACGCAGATTGTTTAAGGAGATGGTTACTTGAGAAAAATGTCTGCCCCCTGTGCAAATCAGTAGCATTGACTCCTCCAGGAGAAAAACAATGA 1137 0.3421 MDQMSQQVYFHSESIHFSGTNICLASGNGISLDCHYVLDAHDSYLDQHFQPYVQGHALAWHLSLPVPYVQAFIANGSSSENGRIGPQRYHDTTSSRGGHRFPQRYHDTTGSRSGHRFPQRYHDTTGSRSGHRFPQRYHDSTGSRSGHRFPHPPPQYHSFHHQVLPAQVIRGHSFNIHPPVTAPSYRVPTNPSHGSSILIHDAFEMGARHPGFAPFAGARIRQSHRGNLQEMITLINLPPAVFFPDDDVALLVDHHTDMHLDTEDMSYEASILCIDLLELGEQIGNAKSGLSEKIITSQMKTKTYILPTNATNLEEADSEEQETDLCIICQDEYKNKENIGILRCGHEYHADCLRRWLLEKNVCPLCKSVALTPPGEKQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02090 378 MobiDBLite consensus disorder prediction 76 92 - -
Gma06g02090 378 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 134 375 - -
Gma06g02090 378 MobiDBLite consensus disorder prediction 93 145 - -
Gma06g02090 378 SMART ring_2 326 366 IPR001841 -
Gma06g02090 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 371 IPR013083 -
Gma06g02090 378 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Gma06g02090 378 SUPERFAMILY RING/U-box 319 373 - -
Gma06g02090 378 MobiDBLite consensus disorder prediction 76 149 - -
Gma06g02090 378 Pfam Ring finger domain 325 367 IPR001841 -
Gma06g02090 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 134 375 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02090 Gma-Chr6 35367410 35369617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02090 253 374 C3H Transcription Factor Family AT2G15530 41.803 2.63e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02090 K19041 - gmx:100820042 783.482