Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02044 ATGGCGAAGCAGCAAACACACGAAATCAATGCAAGCACTAACAATAACATTAACACAACTAAAACTGTCACCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCCAGAAATTCCCCACCTCAACGCAGCTCAATATACAGAGGAGTCACTAGACACCGATGGACAGGTCGATACGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCACAGAACAAGAAAGGACGGCAAGGATGCTTTGCTCTTGAAGGTGCTTATGACGATGAAGAGGCCGCAGCACATGCTTATGATCTAGCAGCATTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCGACCTACCAGAATGAACTGAAGGAAATGGAGGGTCAATCTAGGGAAGAGTATATTGGATCACTAAGGAGGAAAAGCAGCGGTTTTTCTCGTGGAGTTTCTAAATACAGAGGTGTTGCAAGACACCATCATAACGGAAGATGGGAAGCTCGGATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTCGGAACTTATGCAACCCAAGAAGAAGCTGCCACAGCATATGACATGGCAGCTATTGAATATCGAGGACTCAACGCTGTGACCAATTTTGACCTCAGCCGCTATATCAAGTGGCTTAAGCCCAATAACAACAATAACAAAGTCAATTCTAATAATCTTATTGTCTCTATCCCTAATT 709 0.4344 MAKQQTHEINASTNNNINTTKTVTTKVKRTRRSVPRNSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGCFALEGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNNNKVNSNNLIVSIPN 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02044 236 SUPERFAMILY DNA-binding domain 149 210 IPR016177 GO:0003677
Gma06g02044 236 Pfam AP2 domain 149 200 IPR001471 GO:0003700|GO:0006355
Gma06g02044 236 Pfam AP2 domain 45 106 IPR001471 GO:0003700|GO:0006355
Gma06g02044 236 Gene3D AP2/ERF domain 45 116 IPR036955 GO:0003700|GO:0006355
Gma06g02044 236 Gene3D AP2/ERF domain 149 210 IPR036955 GO:0003700|GO:0006355
Gma06g02044 236 SUPERFAMILY DNA-binding domain 44 116 IPR016177 GO:0003677
Gma06g02044 236 MobiDBLite consensus disorder prediction 1 24 - -
Gma06g02044 236 CDD AP2 149 210 IPR001471 GO:0003700|GO:0006355
Gma06g02044 236 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 228 - -
Gma06g02044 236 ProSiteProfiles AP2/ERF domain profile. 45 114 IPR001471 GO:0003700|GO:0006355
Gma06g02044 236 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 2 228 - -
Gma06g02044 236 SMART rav1_2 150 214 IPR001471 GO:0003700|GO:0006355
Gma06g02044 236 SMART rav1_2 45 120 IPR001471 GO:0003700|GO:0006355
Gma06g02044 236 MobiDBLite consensus disorder prediction 1 44 - -
Gma06g02044 236 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Gma06g02044 236 PRINTS Ethylene responsive element binding protein signature 190 210 IPR001471 GO:0003700|GO:0006355
Gma06g02044 236 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02044 Gma-Chr6 30902892 30906845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02044 41 212 AP2-EREBP Transcription Factor Family AT5G57390 70.349 2.26e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gma06g02044 AP2 5.3e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02044 K09285 - gmx:100804555 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01688 04 45897255 45899744 Gma06g02044 06 30902892 30906845 GST